Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1337 ATGAGTTCGGTGCCAAAGGAGACAATCGAAGTGATCGCACAGAGCATTGGCATCACCAATTTGTCCCCCGATGTTGCTCTCGCTCTCGCTCCCGATCTCGAGTATCGTATTCGCGAAATCATGCAGGAGTCGATAAAATGTATGCGCCACTCGAGGAGAACTTTCCTTACTTCAGATGATGTGGATAGTGCACTTGCATTGAGAAATTTAGAGCCGATATATGGTTTCACCTCAAATGATCCTCTGCGGTTCAAAAGAGCTGCTGGGCACAAGGATTTGTTCTACATTGATGACAAAGATGTGGATATTAAAGATCTGCTTGAAGCACCTTTACCAAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTGCAACCTGCGATTCCCGAAAATGCTCCAGTTGAAGCTTCGTCTGAGATGAGAAAATCTGAATACAAGGAAGACGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATGTAATAACAAGGGAGCTTCAGCTTTACTATGAAAAAATTACTGGGCTGAGTTTAAATAAGCCTGGTTCTATTCCTTTTAGAAGAGCATTGGTTAGCTTGGCAACTGACTCCGGACTTCATCCCTTAGTTCCTTATCTCACATGCTTTGTTGCAGATGAGGTGGCACGAAATCTAAATAATTTAAATATTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCATAATCCTCACATACACACAGAACTTTATGTACATCAGTTGATGCCACCTATCCTTACTTGCGTCGTTGCGAAAAGGATAGGAAACAGACTATCTGATGATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCAAAAGATTTGGGCATGTTTATCACAATCTTCAGCCGCGTGTGACGAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTCTAACTCAACACTATGGTGCAATTATAGGAATAGCAGCTCTTGGATCAAGAATGGTGCGCTTGCTTATACTTCCGAATCTCGAGCCGTATTTGCATCTCATTGAGCCAGAAATGCAACTTGAGAAGCAAAAAAATGAAATAAAAAGGCATGAAGCGTGGCAAGTTTATGGGGCCTTGTTGTGTGCAGTAGGTCAATGTATGCATGAAAAGGCCAAAATATTCAGCAGTTTGCTCTCACCTCCAACCCGTGTCACTTCAAGAGGCAATGGAAAAGCCTTGATTTCAATGCCAATTAATGTAGGTAAACGTAAAGCCAGCACTGACAATCTAATGCAGCAGCAGCAACCTCCACTGAAGAAAATTGCAACAGATGGTCCTGGGGGTGTAATAGCAATGAACTCCATGTCAGTGGACAACATGCAAGGTTCAACAGGTGGATATTCCACCATGATGGGGGTTTCCAATGTTGGCATGTCATCAATGGGTCGTCAATTATCCAATGACCATCACATGCCAGGAAGAGAGGTTGCGGGTCAACAATCGAAAGCATCTGCCATTCTTGCTCAAGCTTGGAAGGATGACATCGATGCAGGACAGTTGCTGTCATCAGTGGTTGAATTATTTGGCGAAAGAGTGTTGTCATTTATTCCAAAACCTGAAGCATGTATATTTTTGTAA 1635 0.4275 MSSVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSRRTFLTSDDVDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYIDDKDVDIKDLLEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEASSEMRKSEYKEDGLPVDVKLPVKHVITRELQLYYEKITGLSLNKPGSIPFRRALVSLATDSGLHPLVPYLTCFVADEVARNLNNLNILFALMRLVRSLLHNPHIHTELYVHQLMPPILTCVVAKRIGNRLSDDHWELRNFSANLVASICKRFGHVYHNLQPRVTKTFLHSFLDPTKALTQHYGAIIGIAALGSRMVRLLILPNLEPYLHLIEPEMQLEKQKNEIKRHEAWQVYGALLCAVGQCMHEKAKIFSSLLSPPTRVTSRGNGKALISMPINVGKRKASTDNLMQQQQPPLKKIATDGPGGVIAMNSMSVDNMQGSTGGYSTMMGVSNVGMSSMGRQLSNDHHMPGREVAGQQSKASAILAQAWKDDIDAGQLLSSVVELFGERVLSFIPKPEACIFL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1337 544 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Lja6g1337 544 SMART TAF_cls 2 68 IPR004823 -
Lja6g1337 544 Gene3D - 164 369 IPR046344 GO:0006367
Lja6g1337 544 CDD TAF6C 165 381 IPR011442 GO:0006367
Lja6g1337 544 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 544 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Lja6g1337 544 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Lja6g1337 544 SUPERFAMILY Histone-fold 2 65 IPR009072 GO:0046982
Lja6g1337 544 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 544 - -
Lja6g1337 544 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Lja6g1337 544 SUPERFAMILY ARM repeat 202 395 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1337 Lja-Chr6 38418313 38424682 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1337 K03131 - gmx:100799998 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1337 6 38418313 38424682 Lja6g1337 6 38418313 38424682 ECH