Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1321 ATGGTGGTTACAGAGGAAGAAATATCGGAAGCATTGCAATCTCTCCTTCGAGAATCAAACCCTAGAAGACCAACATTCACCACGCTCAACCAAGTGCTTCACCAGCTTCAAACCAACCTCGGCCACGACCTCTCTCACAAGCTCGATTTCATCGCCGCTCAGATCAACCTCCTCCTCGCTCAACAACAACCGCCGCCGCAGAGGCAACAACCCCATCAGCACCAACCACCACCTCCGAAAGACCATTTTGCCCTTCACCAAAACCCTAATTACCCCCATGGACCTGTCACTTCCTCGTTTCAGACCTTCTCTTCCAACCCTGTTCCCGCTGTCGCTGAGGCTGCTCGCACTGAAGCTCCTCCTCCTCCTCCGCCTCCGCCTCATGTCCCTCGCAATGAAGCTCCCAAGGATAGTACTCAAACTAAGCCGAAGAGAAGAGGTGGCCCTGGAGGTCTCAACAAACTTTGTGGTGTTTCACCTGAACTACAGGTCATTGTTGGCCAGCCAGCATTGCCAAGGACTGAGATCGTAAAGCAACTCTGGGCTTACATAAGGAAAAACAATCTCCAAGATCCTAGCAACAAAAGGAAAATAATTTGCAATGATGAACTGCGCGTGGTGTTTGAGACGGATTGTACTGATATGTTCAAGATGAATAAGTTACTAGCTAAACACATAATCGCCCTTGAACCAAGCAAACAGCCTGCTCCAAAGAGGCAGAAGGTAGATGTGGAGTCAGGAACCAAAAGTGCTGAACCTGCTCCTTCTGTGATAATATCTGATACACTTGCCAACTTTTTTGGCGTTACTGGAAGGGAGATGCTACAGTCAGAGGTTCTGAGGCGTATCTGGGAGTACATTAAGGTCAAGCAGTTGGAGGATCCTGTGAATCCTATGGCAATTATGTGCGATGCAAAGCTTCAGGAGATCTTTGGCTGCGAAAGCATTTCAGCATTGGGGATACCAGAAGTTTTGGGCCGTCATCATATTTTTAGGAGATCATGA 1005 0.4846 MVVTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLGHDLSHKLDFIAAQINLLLAQQQPPPQRQQPHQHQPPPPKDHFALHQNPNYPHGPVTSSFQTFSSNPVPAVAEAARTEAPPPPPPPPHVPRNEAPKDSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIALEPSKQPAPKRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEVLRRIWEYIKVKQLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRHHIFRRS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1321 334 Pfam DEK C terminal domain 3 59 IPR014876 -
Lja6g1321 334 ProSiteProfiles SWIB/MDM2 domain profile. 151 228 IPR003121 -
Lja6g1321 334 MobiDBLite consensus disorder prediction 234 253 - -
Lja6g1321 334 MobiDBLite consensus disorder prediction 116 132 - -
Lja6g1321 334 SMART swib_2 256 334 IPR019835 -
Lja6g1321 334 SMART swib_2 152 231 IPR019835 -
Lja6g1321 334 SUPERFAMILY SWIB/MDM2 domain 247 329 IPR036885 -
Lja6g1321 334 ProSiteProfiles SWIB/MDM2 domain profile. 252 331 IPR003121 -
Lja6g1321 334 Gene3D - 2 61 - -
Lja6g1321 334 Gene3D SWIB/MDM2 domain 247 333 IPR036885 -
Lja6g1321 334 Gene3D SWIB/MDM2 domain 147 236 IPR036885 -
Lja6g1321 334 MobiDBLite consensus disorder prediction 63 155 - -
Lja6g1321 334 SUPERFAMILY SWIB/MDM2 domain 146 232 IPR036885 -
Lja6g1321 334 Pfam SWIB/MDM2 domain 156 226 IPR003121 -
Lja6g1321 334 Pfam SWIB/MDM2 domain 258 328 IPR003121 -
Lja6g1321 334 CDD SWIB-MDM2_like 257 328 - -
Lja6g1321 334 PANTHER - 5 69 - -
Lja6g1321 334 PANTHER - 133 330 - -
Lja6g1321 334 MobiDBLite consensus disorder prediction 91 108 - -
Lja6g1321 334 CDD SWIB-MDM2_like 156 226 - -
Lja6g1321 334 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 5 69 - -
Lja6g1321 334 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 133 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1321 Lja-Chr6 38139217 38142911 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja6g1321 SWIB 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1321 K15223 - gmx:100801960 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1321 6 38139217 38142911 Lja6g1321 6 38139217 38142911 ECH