Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1318 ATGTTGCATTTCATGGGTCTCCCACATGTACTTGCTCTGCATATTCTTCGGTACTTATTATTGGTAGCATTGGTATCTTCTTCTGGACCTGAAACTGGCTGGAAAACTTTGCAAGGATCTCCCCCACTGGTGATAGCACGTGGTGGGTTTTCAGGGCTATTTCCAGATTCAAGTTTACCTTCCTATAGTTTGGCACTAAACACTAGTGGCCCAAATATCACTCTATGGTGTGATGTGCAGCTGACAAAGGATGGAGTTGGGATTTGTTTTCCAGAGCTCAAGCTGGACAATGCCACTGACATTTCCATTGCTTACCCAGGAAAAGCAAATGATTACTCAGTTAATGGGGTTCCAACCCGGGGATGGTTTTCTGTAGATTACAACTTCAAGCAACTAGCAAATGTGTCTCTTGTTCAGGGAGTGTATTCTAGAACTAATAAATTTGATGGATGTAACTATCACATTCTCAGTGTTGAAGATGTAGTCAAATTAGTAAAATCACCATCAACAGGGTTGTGGTTAAATGTTCAGCATGATACATTCTTCAAGCAGCAGAATTTGAGTGTAGAAAGTTTTCTACACTCTCTCTCAACTAAACCAGTATCTATCAATTACATCTCATCACCTGATGTGGATTTCTTGAGAAGGGTAAGATCAAACTTCGGTTCTAAAACAACAGGCCAGATTTTCAGGTTTCTAGAGCAGGATAAGATTGAACCTGCAACCAATCAGACTTATGGCGCACTGTTGAAAAACCTCACGTTTATCAGAACTTTTGCTTCTGGAATTCTTGTTCCCAAGGGTTATATATGGCCTGTAGACTCAGAACTTTATCTGCAACCACATACCTCTCTTGTCTCAGATGCTCATGAAGAAGGGCTTCAAGTTTTTGTATCAGGCCTTGTTAATGATGTTCCATTTAGCTACAATTTCAGTAATGATCCTCTGGCTGAGTGCCTGTCTTTCATTGACAGTAGTACCTTCTCCGTTGATGGCATGCTCTCTGATTTCCCAGTAACTCCCTCTGCAGCCATAAATTGCTTTTCAGGATTAGGAGAAAATGCCAAAAAACAAGTGGAGTCTTTGGTCATCACAAAATATGGAGCAAGTGGAGATTATCCTGCTTGTACTGACCTTGCCTATAAGAAAGCAAAACTAGATGGAGCAGATGTACTTGACTGTCCTGTTCAAATGTCAAGTGATGGAATACCATTTTGCTCAAGTTCTATAGATCTTTTAGAGAGCACAACAGTTGCTGATACCAAATTCAAAAGCCGGGTAACTACTATTCCGGAGATCAAATATGGCAGTGGCATATATACATTTAGCTTGACATGGAATGAGATAAAAACATTGACTCCCTCAATATTGAACCCTTATGAGAAGTACTTGTTGTATCGGAATCCGAAATTAAAAAACCAAGGGAAATTTTTAACATTGTCTGATTTTTTGTCATTGGGTAAAGACTCTGGCATCTTGATCAGCATAGAGAATGCTGCTTACCTTGCAGAGAAGCGGGGTTTAAGCGTGACAAATGCAATCCTTGATGCTTTAACGAAAGCAGGTTATGATAAACCAGGATCCCGTAAAGTTATGATTCAATCAACTCATAGCTCTGTACTGAAGATATTCAAGGACAAATCCAAATACGAAAGGGTTTACAAAGTTGATAAGAATATTCGTGATGCAGTTGACTCGGCTATTGAGGACATCAAAACATTTGCTGATTCTGTGGTGGTAGGAAAGGCATCTGTTTTTCCTCAAACTTCAGCCTTTCTAGTTAACTCTACAAACACTGTGGCAAGGCTACAATCATTTAACCTCCCAGTTTATGTAGAAACCTTCAGCAATGAGTTTGTATCTCAAGCATGGGACTACTACTCAGATGCATTTGTTGAGATAAATTCATTTGTCATAGGAGCCAAGGTCAATGGAATTATTACTGACTTCCCTAAAACAGCTGATAGATACAGGAAGAACAGGTGTTTAAAGCATGGCTATAAAGCACCTTATATGAGCCCTGTTGAGCCTGGAAAACTTTTAAAACAAGTTACTAAGTCCTACCTTCCCCCACCAGCCCCTCCGCTCCCAGTCTTGAATGATAGCAATGTGACTGAGGCACCTTTACCTGGTGTTTCTGGAAAAATTCCAATTCCCAGTGCTGCTCCTGGAATAGCACCAGCTCCAGCCCCTATCACAGCATAA 2205 0.405 MLHFMGLPHVLALHILRYLLLVALVSSSGPETGWKTLQGSPPLVIARGGFSGLFPDSSLPSYSLALNTSGPNITLWCDVQLTKDGVGICFPELKLDNATDISIAYPGKANDYSVNGVPTRGWFSVDYNFKQLANVSLVQGVYSRTNKFDGCNYHILSVEDVVKLVKSPSTGLWLNVQHDTFFKQQNLSVESFLHSLSTKPVSINYISSPDVDFLRRVRSNFGSKTTGQIFRFLEQDKIEPATNQTYGALLKNLTFIRTFASGILVPKGYIWPVDSELYLQPHTSLVSDAHEEGLQVFVSGLVNDVPFSYNFSNDPLAECLSFIDSSTFSVDGMLSDFPVTPSAAINCFSGLGENAKKQVESLVITKYGASGDYPACTDLAYKKAKLDGADVLDCPVQMSSDGIPFCSSSIDLLESTTVADTKFKSRVTTIPEIKYGSGIYTFSLTWNEIKTLTPSILNPYEKYLLYRNPKLKNQGKFLTLSDFLSLGKDSGILISIENAAYLAEKRGLSVTNAILDALTKAGYDKPGSRKVMIQSTHSSVLKIFKDKSKYERVYKVDKNIRDAVDSAIEDIKTFADSVVVGKASVFPQTSAFLVNSTNTVARLQSFNLPVYVETFSNEFVSQAWDYYSDAFVEINSFVIGAKVNGIITDFPKTADRYRKNRCLKHGYKAPYMSPVEPGKLLKQVTKSYLPPPAPPLPVLNDSNVTEAPLPGVSGKIPIPSAAPGIAPAPAPITA* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1318 734 Gene3D Phosphatidylinositol (PI) phosphodiesterase 360 657 IPR017946 GO:0006629|GO:0008081
Lja6g1318 734 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 344 IPR017946 GO:0006629|GO:0008081
Lja6g1318 734 ProSiteProfiles GP-PDE domain profile. 361 658 IPR030395 GO:0006629|GO:0008081
Lja6g1318 734 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 5 734 - -
Lja6g1318 734 SUPERFAMILY PLC-like phosphodiesterases 367 658 IPR017946 GO:0006629|GO:0008081
Lja6g1318 734 CDD GDPD_SHV3_repeat_2 362 657 - -
Lja6g1318 734 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN 5 734 - -
Lja6g1318 734 Pfam Glycerophosphoryl diester phosphodiesterase family 368 653 IPR030395 GO:0006629|GO:0008081
Lja6g1318 734 Pfam Glycerophosphoryl diester phosphodiesterase family 49 338 IPR030395 GO:0006629|GO:0008081
Lja6g1318 734 ProSiteProfiles GP-PDE domain profile. 42 345 IPR030395 GO:0006629|GO:0008081
Lja6g1318 734 CDD GDPD_SHV3_repeat_1 42 344 - -
Lja6g1318 734 SUPERFAMILY PLC-like phosphodiesterases 41 344 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1318 Lja-Chr6 38053148 38059227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1318 1 731 Receptor kinase-like Gene Family AT4G26690 55.902 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1318 - - gmx:100813869 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1318 6 38053148 38059227 Lja6g1318 6 38053148 38059227 ECH
Lja6g1318 6 38053148 38059227 Lja6g1318 6 38053148 38059227 PCT