Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1306 ATGGATTCCCCCCAATCTGTTGTGTCACCCTTCAGGAGCTTGGTTTTGGGTGAGGGTGAGAAGCACAAGTCTAAGGACATTGAAGTCAATGGGAAGGAAGCAGTCATGTCAAATGTGGAGGAGTTCCTTGGAGTGCTTGACGTTTTCGTGCACCAAGCCAGGGACATTCAGAACATTTGCATATATCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACTAGTAATCCTGAGAATACCGTTTCTACTAAGACTATCAATGGAGGAGGAAGGAACCCTGTCTTCAATGATAATCTTCGTCTCAATGTTCCGACTATTGAGTGTTCTCTCAAGTGTGAGTTATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTGCTTTGGTACCTTTGTCTGAAGTACTAGTCCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTCCATTCCCCTGCAGGTTTTGTTCAGTTATCCCTTTCTTACACTGGTGCTTCCCCTGATGTTATGGCGATTTCAACAACGCCTACAGGGTTGTCCTCACATGTCACTGAGCAATGCTCAGAAACTTCTGAGTCATTGGCCAGGGATTTGGATAAAATTGAGTTCCCAGATCCTAAGATTGCAAATGAAGACCACTTGATGGTTTCAGAATATTTTGGCATTCCATGTGAGGAGACTCAGTGCTCTGATAGCTTGGCCACTTCTGATGCTGAGAATCATAGTTCTGAAGCCGGTGTTCGTCTTGTTGAAAGTTTCGCAGCATGCAGTGTTGAATCTGCCCAACCTCCTAAGGTTGATTCTCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCTCATTCTGCACCTGCAAGCTCAGAATCATCTGACGCTGCTGCTTCTAAGTCTCCCGCTCAGGAACAAGTTTCAGGCACCAAAGAAGATAAAAACGTGGATGATAAAGTTGGTGAAAGCAATTCCTCAAATGGGGCTCAGAGAGACACATTTCCTAAGCCTGTTGTAACTGTGAACATTGAGCCAGAGCCACAGATGGTGCAGCAGGATATTGTTGACATGTACATGAAAAGCATGCAGCAATTCACCGAGTCATTAGCAAAAATGAAGCTTCCTATGGACATCGAAAGTGAACCAACTAGTTCAGGAAACTCAAGCACTGAGCAGAAACTACAGCCACCAAAGAACAGTACCTCCCGTGTGTTTTATGGGAGCAGAGCTTTCTTCTGA 1254 0.445 MDSPQSVVSPFRSLVLGEGEKHKSKDIEVNGKEAVMSNVEEFLGVLDVFVHQARDIQNICIYHKQDVYAKICLTSNPENTVSTKTINGGGRNPVFNDNLRLNVPTIECSLKCELWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPAGFVQLSLSYTGASPDVMAISTTPTGLSSHVTEQCSETSESLARDLDKIEFPDPKIANEDHLMVSEYFGIPCEETQCSDSLATSDAENHSSEAGVRLVESFAACSVESAQPPKVDSPPSSVSTNGVSSHSAPASSESSDAAASKSPAQEQVSGTKEDKNVDDKVGESNSSNGAQRDTFPKPVVTVNIEPEPQMVQQDIVDMYMKSMQQFTESLAKMKLPMDIESEPTSSGNSSTEQKLQPPKNSTSRVFYGSRAFF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1306 417 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 42 174 IPR035892 -
Lja6g1306 417 MobiDBLite consensus disorder prediction 381 417 - -
Lja6g1306 417 MobiDBLite consensus disorder prediction 385 411 - -
Lja6g1306 417 Pfam C2 domain 44 151 IPR000008 -
Lja6g1306 417 MobiDBLite consensus disorder prediction 273 314 - -
Lja6g1306 417 PANTHER EXPRESSED PROTEIN 1 417 - -
Lja6g1306 417 SMART C2_3c 45 148 IPR000008 -
Lja6g1306 417 MobiDBLite consensus disorder prediction 269 342 - -
Lja6g1306 417 Gene3D C2 domain 40 186 IPR035892 -
Lja6g1306 417 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 417 - -
Lja6g1306 417 ProSiteProfiles C2 domain profile. 31 150 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1306 Lja-Chr6 37899403 37901861 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1306 - - gmx:100796499 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1306 6 37899403 37901861 Lja6g1306 6 37899403 37901861 ECH
Lja6g1306 6 37899403 37901861 Lja6g1306 6 37899403 37901861 PCT