Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1299 ATGGACATTTCAGAGTACACAAGGATTGTTTTTGATAAACTTCATAGATTTGAGCCAGAGCATGCCACAAAGATCATTGGCTACCTCCTTCTGCAAGACCATGTTGATCAAGAGATGGTTAAACTGGCTTCATTCCCAGACCATTTGATCCGCGAAGTCGCGCTCAAGGCGAAAACCGAGCTTCAAAAATTGGTGGCTAAATCAAACATTCACCCAATTTCACTCAACCCAATTTCCCCCAGCACTTCCACTTCAACACAAAGCTTCCAGAATGCAGAATTTATTTCAATGGGTTACTGGGATTCTATGCCAGAACTTCAAAAGCATGCCCCAATGTTCAGTTTGGAGAATCATGCAGACACTATAACTACTGGGGGTGCTAAAATTGCTAATGAGTACTATGGCTTAGAGGCATCACCTGGCAATGTAAGTGGAAATGCTGGTAGAAGGTTTCCAAATGTGTCAGAATTTCAAGTCAAGACCTGTCACTATTTCAACAAAGGATATTGCAGGCATGGGAATAGCTGCAGATACTACCATGGACAAGTTGTGCCTGAGATATTCTCTCTGATGCATGGAAATGATGGTTTTAACGACAATCAGGCGATTTCACCGGGTTCACTAGCGCAGTTAGAGTCGGAAATTGTTGAGCTCCTGAAACAAAGAGGCAATCCTATTTCAATCGCTTCACTTCCAATGGCATACTATGATAAGTATAAGAAGGTACTGCAGGCAGAAGGGTACCTAACTGAGAGCCAGAGACACGGTAAGTCTGGCTACAGTTTAACGAAGCTTCTCATCCGATTGAACAATAGTATTCGCGTAATTGACAGCAGGCCTCATGGTCAGCATGCTGTGGTTCTGGCAGAAGATGCTCCGAAATCCCGGGGAAAGGTAGAGTTTGGTCATAATATTAGTGCATTAAGACAAATATACCTGACATTTCCAGCTGATAGCACTTTCACTGAGGAGGATGTCTCAAACTACTTCAGCACTTTTGGGTGTGTTGAAGATGTAAGGATTCCTTGCCAGCAGAGAAGGATGTTTGGATTTGTCACATTTGTTGATCCAGAAACTGTTAAGATGATTTTGGATAAGGCAACTCCGCATTATGTTCGTGGATCTCGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTTTGGACAGGAAGTACCCAGATAGAATCGAGCATCCTGATTGTTATTCCCCACACTATTACAGCGACACCGAATTTATCTCAATTCCGAGAAGTTGCAGAAACCCTCGATCGCTGAGGAGGCTGCTCGTTGAAGAGCAAGAGCAGGCCCTTGAATTTCAGAGGAGGCATCTTGCAGCGCTGCAACTGACCCAAAAATCTTTGTCCATCAACATGGATGGGTTAAAAGTTTCAGATGATCATTTCAATGTCCATCTTGCAGAATCTTTCAGTCATGAGTCAAACAACAAACCTGGCTATACAAATGCCAATTACACTGATGAGGACAGTGCGGTGGCTGCCCTCTTCTCGGATTTGGGTTCCTTGCCACACCAGGAAAACCTACATTCACGCAGTCAAGAAATCTGCACTGTTTGA 1578 0.4366 MDISEYTRIVFDKLHRFEPEHATKIIGYLLLQDHVDQEMVKLASFPDHLIREVALKAKTELQKLVAKSNIHPISLNPISPSTSTSTQSFQNAEFISMGYWDSMPELQKHAPMFSLENHADTITTGGAKIANEYYGLEASPGNVSGNAGRRFPNVSEFQVKTCHYFNKGYCRHGNSCRYYHGQVVPEIFSLMHGNDGFNDNQAISPGSLAQLESEIVELLKQRGNPISIASLPMAYYDKYKKVLQAEGYLTESQRHGKSGYSLTKLLIRLNNSIRVIDSRPHGQHAVVLAEDAPKSRGKVEFGHNISALRQIYLTFPADSTFTEEDVSNYFSTFGCVEDVRIPCQQRRMFGFVTFVDPETVKMILDKATPHYVRGSRVLVKPYKEKPKLLDRKYPDRIEHPDCYSPHYYSDTEFISIPRSCRNPRSLRRLLVEEQEQALEFQRRHLAALQLTQKSLSINMDGLKVSDDHFNVHLAESFSHESNNKPGYTNANYTDEDSAVAALFSDLGSLPHQENLHSRSQEICTV* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1299 525 Coils Coil 431 451 - -
Lja6g1299 525 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 182 IPR000571 GO:0046872
Lja6g1299 525 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 78 - -
Lja6g1299 525 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 79 498 - -
Lja6g1299 525 Gene3D - 136 189 - -
Lja6g1299 525 Pfam OST-HTH/LOTUS domain 207 284 IPR025605 -
Lja6g1299 525 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 78 - -
Lja6g1299 525 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 79 498 - -
Lja6g1299 525 SUPERFAMILY CCCH zinc finger 155 182 IPR036855 GO:0046872
Lja6g1299 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 375 IPR000504 GO:0003723
Lja6g1299 525 ProSiteProfiles Zinc finger C3H1-type profile. 156 183 IPR000571 GO:0046872
Lja6g1299 525 SMART rrm1_1 310 380 IPR000504 GO:0003723
Lja6g1299 525 Gene3D - 316 387 IPR012677 -
Lja6g1299 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 384 IPR000504 GO:0003723
Lja6g1299 525 SUPERFAMILY RNA-binding domain, RBD 320 398 IPR035979 GO:0003676
Lja6g1299 525 CDD RRM_AtC3H46_like 311 380 IPR034365 -
Lja6g1299 525 ProSiteProfiles OST-type HTH domain profile. 207 291 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1299 Lja-Chr6 37762842 37766236 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1299 - - gmx:100806206 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1299 6 37762842 37766236 Lja6g1299 6 37762842 37766236 ECH
Lja6g1299 6 37762842 37766236 Lja6g1299 6 37762842 37766236 PCT