Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1270 ATGGCCACTTGTGTTGATTCCTCTACCGTTTCGCTTTCCCGGAAGCCAAACGGGTCCCAATTCCGCCGACCCAGTTTCTCCGATCGTGTTCCCCATATGCCCATTTGCAAGAACCGTGACAAAACCTCGCAACCGTGCTCCGTCGTGGAGGAATTGGAGCACGGCGAGAAGGTTGATCTGTGGCAGAGGATTCAGGAGGAGGCTAGAGTGGATGTGGATCAGGAACCTGTTTTGTCCAGCTACTATTTCAGCTCTATCTTGTCTCACAAATCGTTGGAAAGCGCTTTGGCGAATCAGCTTTCCATCCATTTGAGCAGTTTGAGCCTTTCTAGCACCACCCTCTTTGATATTCTCATGGGGGTTCTGGTGGATGATGATGAAATCATAGGTGCTGTGAAGGATGATTTGAGAGCAGTGAAGGAGAGAGACCCTGCTTGCATTAGCTATGTTCATTGCTTGATGAATTTCAAAGGCTTTCTTGCTTGCCAAGCTCATAGGGTGGCTCATAAATTGTGGCTACAGGGGAGGAAGGTTTTAGCACTGTTGATTCAGAACAGGGTTTCTGAAGTTTTTGCAGTGGACATTCATCCTGGTGCTAAAATTGGGCATGGGTTTTTGTTGGATCATGCAACTGGACTTGTGGTGGGGGAAACAGCTGTAATTGGGAATAATGTTTCAATTCTGCATAATGTCACATTGGGAGGAACAGGTAAGGCTTCAGGGGATAGACACCCAAAAATTGGTGATGGAGTGTTGATTGGTGCAGGGACTTGTATCTTGGGAAATATTAAGATTGGTGATGGTGCTAAGATTGGTGCTGGTTCTGTAGTGTTGAAGGAAGTGCCACCAAGAACCACTGCTGTTGGGAACCCAGCAAGGTTGTTAGGAGGAAAGGATAACCCTATCAAGTTAAATAAGATTCCTAGCTTTACCATGGACCATACTTCTTACATATCTGAATGGTCTGATTATGTTATCTAG 981 0.4597 MATCVDSSTVSLSRKPNGSQFRRPSFSDRVPHMPICKNRDKTSQPCSVVEELEHGEKVDLWQRIQEEARVDVDQEPVLSSYYFSSILSHKSLESALANQLSIHLSSLSLSSTTLFDILMGVLVDDDEIIGAVKDDLRAVKERDPACISYVHCLMNFKGFLACQAHRVAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAKIGHGFLLDHATGLVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKEVPPRTTAVGNPARLLGGKDNPIKLNKIPSFTMDHTSYISEWSDYVI* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1270 326 Pfam Bacterial transferase hexapeptide (six repeats) 244 278 IPR001451 -
Lja6g1270 326 PANTHER SERINE ACETYLTRANSFERASE 1 326 - -
Lja6g1270 326 SUPERFAMILY Trimeric LpxA-like enzymes 56 296 IPR011004 -
Lja6g1270 326 MobiDBLite consensus disorder prediction 1 24 - -
Lja6g1270 326 SMART SATase_N_2_a 60 164 IPR010493 GO:0005737|GO:0006535|GO:0009001
Lja6g1270 326 CDD LbH_SAT 191 291 IPR045304 -
Lja6g1270 326 Gene3D Hexapeptide repeat proteins 194 312 - -
Lja6g1270 326 Gene3D serine acetyltransferase, domain 1 45 193 IPR042122 -
Lja6g1270 326 TIGRFAM cysE: serine O-acetyltransferase 132 293 IPR005881 GO:0005737|GO:0006535|GO:0009001
Lja6g1270 326 MobiDBLite consensus disorder prediction 1 32 - -
Lja6g1270 326 PANTHER SERINE ACETYLTRANSFERASE 1 326 - -
Lja6g1270 326 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 253 281 IPR018357 GO:0016740
Lja6g1270 326 Pfam Serine acetyltransferase, N-terminal 60 164 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1270 Lja-Chr6 36911545 36913068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1270 60 314 Miscellaneous Gene Families AT2G17640 53.725 5.05e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1270 K00640 - gmx:100779106 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1270 6 36911545 36913068 Lja6g1270 6 36911545 36913068 ECH
Lja6g1270 6 36911545 36913068 Lja6g1270 6 36911545 36913068 PCT