Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1265 ATGAACTCCGGCGGCAGCGGCGGCGGCGACGTCTACAAGGTTTGGGAAATCAAAACTAACAAGAGGTTGCCAAGGGAACAAGAAGCCAGAAAGTTTTTGGAGGCGATCGCCAAAGCGGTCCAGCCCATCATGCACAACCACAAATGGAGTGTCAAGCTTCTCTCTGAATTCTGCAATAAGAGGTATTTGGGGTATAATATTGGAGGTGGTCAACATGTGAAGTTGTGCCTAAGGAGGCTAAAGTGGGATTGGGAGTGGGACCATTGGAAGTTTCTCCCATTTGATGAAGTTCTGGATACGATGCTTCATGATCTTTGCCATAATGTCCACGGTCCTCGTCATAATGCCGCCTTCTACAAGCTCTTGGATCAACTTACAAAGGAATATGCTGAGTTGAGGCCTAAGGGAATACCTGGCTTTGGAAATAGGTTTGATCTTCCAGGGAATACCTGGCTCTGGAAACAGGAATTTAATGAGTTCATGGCTGAGGGAATACCTGGCTTTGGAAACTGGTTTGATCTTCCAGGGAGGCGCTTAGGTGGCTATTCTCCGCAACATCCTTTTTCAGCTGCAGAAAAGTGGTCACAAGTGGGATCTCTTCTTCCGTCCGGACCAAGACCGAAACGTCTAGGCGGTGATATTGTTACAATGGAGGCACTTAGTCCAGCACAGGCTGCTGCAATGGCTGCAGAAAGGAGATTACAGGATAACATATGGTGTGGTTGTGAACATTCAGATCATGAAGATGAAGATGTTAGCTATGAATCTGCTGAGAATATTGTACATAAGCGGAAAATTGTTGGAAGCACAAAACTAACAAACAATTCTACTCTACCTTGGGATCAAGTATCTCAAAAAAGAAGTCGTTCTAAGGATTTAATTTTACCCATTCACTCATCTAGTGCCTCAATGTTTATAGATTTAACTGAGGATGAACAAGAAGTTGGATCTATCACTCAACATCGAAATTTCGGACTAGAAAGCGTTTCAGATTCCCAATTCAATTCTCAGGCTGGATCTAGTTCTCATTCCGAAGAACCTGCAATGTGGGAGTGTCCGATGTGCACTCTGTTGAATATGACAAGTGCTTCTATATGTGAGTTCTGTGACACACAACAGCCAAAAGATGTTACCACCAAAGTACAACAACACTTGGTCTTGTAA 1164 0.4407 MNSGGSGGGDVYKVWEIKTNKRLPREQEARKFLEAIAKAVQPIMHNHKWSVKLLSEFCNKRYLGYNIGGGQHVKLCLRRLKWDWEWDHWKFLPFDEVLDTMLHDLCHNVHGPRHNAAFYKLLDQLTKEYAELRPKGIPGFGNRFDLPGNTWLWKQEFNEFMAEGIPGFGNWFDLPGRRLGGYSPQHPFSAAEKWSQVGSLLPSGPRPKRLGGDIVTMEALSPAQAAAMAAERRLQDNIWCGCEHSDHEDEDVSYESAENIVHKRKIVGSTKLTNNSTLPWDQVSQKRSRSKDLILPIHSSSASMFIDLTEDEQEVGSITQHRNFGLESVSDSQFNSQAGSSSHSEEPAMWECPMCTLLNMTSASICEFCDTQQPKDVTTKVQQHLVL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1265 387 Pfam WLM domain 13 234 IPR013536 -
Lja6g1265 387 PANTHER ZINC ION BINDING PROTEIN 9 149 - -
Lja6g1265 387 Gene3D - 339 386 - -
Lja6g1265 387 ProSiteProfiles Zinc finger RanBP2 type profile. 346 375 IPR001876 -
Lja6g1265 387 PANTHER ZINC ION BINDING PROTEIN 154 382 - -
Lja6g1265 387 SUPERFAMILY Ran binding protein zinc finger-like 345 373 IPR036443 -
Lja6g1265 387 ProSiteProfiles WLM domain profile. 5 235 IPR013536 -
Lja6g1265 387 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 154 382 - -
Lja6g1265 387 CDD M48_yhfN_like 88 133 - -
Lja6g1265 387 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 9 149 - -
Lja6g1265 387 SMART zf_4 348 372 IPR001876 -
Lja6g1265 387 ProSitePatterns Zinc finger RanBP2-type signature. 350 369 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1265 Lja-Chr6 36835952 36838592 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1265 K22685 - gmx:100795976 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1265 6 36835952 36838592 Lja6g1265 6 36835952 36838592 ECH