Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1247 ATGCAGCTGCTCCGCCCGGCAACCATGGCGGCTCTCGCGGCAGCGCTGCTCCTCCTCACCATGGCTTCTACCACCACAAACGCCCACAACATCACCGGCATTCTCGCCAAGCACCCCGAGTTCTCCACCTTCAACCACTACCTCACCCTCACCCACCTCGCCGCCGAGATCAACCAACGGACCACAATCACCGTCTGCGCCGTCAACAACGCCGCCATGGACGACCTCCTCTCAAAACACCCATCAATCACCACCGTCAAGAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACAATGTACCAAGCCACCGGCACCGCCCCGGGCTCCGCCGGATTCGTCAACATCACCGACCTCCGCGGCGGGAAAGTCGGATTCGGCGCCGAGAACAACGACGGCACCCTCTCCGCTTCGTTCGTCAAATCCGTAGAGGAAATCCCCTACAACATCTCCATCATCCAGATCAGTAAGGTTCTTCCCTCCGCCGCAGCAGAAGCCCCTGCACCCGCACCCGCTCAGCAGAATCTCACCGCCATTATGTCCAAGCACGGTTGCAAGATCTTCGCCGACACTCTCTCCGCCACGCCGGACGCGTACTCAACCTTCACCGACAACCTCGACGGTGGGTTAACCGCGTTCCTACCCAAGTTCAAGAACCTCACCGCCGCCGGGAAGGTCTCGCTGCTGGAGTTTCACGCTGTTCCGGTTTACCAGTCCATTGCTACGCTGAAATCCAGCAATGGGGTTCAGAACACGCTCGCCACCGACGGCGCCAACAAGTACGACTTCACCGTACAGAACGACGGCGACAAGGTCACGCTCAAGACCAGGGGAGTCACCGCCAGGATCATCGACACGCTTATCGACGAGCAGCCCCTCGCGATCTTCGCCATTGACAAGGTTCTACTCCCCAAGGAGCTCTTCAAGGCTGCGGAGGCGCCGTCGCCTGCTCCGGCGCCGGAGCCTTCTGCTGCGGACGCTCCTAAGGCGGCGAAGAAGAAGAAGAAGCCGAAGACGAAGGCGGCTGATGCACCCGCAGATGATAGCTCCGACGCGCCTGCTGATTCGCCGGATGATGCCGCCGATCAGACCGCCGACGACAGTAACGGCGCCGTTAGGTTTGACGGCGGCGGCGTTGTCATGGGTTTGGCTTTAATGGTTGGTTTTCTACTGCTGTGA 1230 0.6073 MQLLRPATMAALAAALLLLTMASTTTNAHNITGILAKHPEFSTFNHYLTLTHLAAEINQRTTITVCAVNNAAMDDLLSKHPSITTVKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLRGGKVGFGAENNDGTLSASFVKSVEEIPYNISIIQISKVLPSAAAEAPAPAPAQQNLTAIMSKHGCKIFADTLSATPDAYSTFTDNLDGGLTAFLPKFKNLTAAGKVSLLEFHAVPVYQSIATLKSSNGVQNTLATDGANKYDFTVQNDGDKVTLKTRGVTARIIDTLIDEQPLAIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPKTKAADAPADDSSDAPADSPDDAADQTADDSNGAVRFDGGGVVMGLALMVGFLLL* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1247 409 MobiDBLite consensus disorder prediction 329 389 - -
Lja6g1247 409 Gene3D FAS1 domain 26 177 IPR036378 -
Lja6g1247 409 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 8 398 - -
Lja6g1247 409 ProSiteProfiles FAS1/BIgH3 domain profile. 28 176 IPR000782 -
Lja6g1247 409 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 398 IPR033254 -
Lja6g1247 409 Gene3D FAS1 domain 199 321 IPR036378 -
Lja6g1247 409 Pfam Fasciclin domain 39 115 IPR000782 -
Lja6g1247 409 Pfam Fasciclin domain 217 321 IPR000782 -
Lja6g1247 409 SUPERFAMILY FAS1 domain 34 176 IPR036378 -
Lja6g1247 409 ProSiteProfiles FAS1/BIgH3 domain profile. 189 319 IPR000782 -
Lja6g1247 409 SMART fasc_3 228 322 IPR000782 -
Lja6g1247 409 SMART fasc_3 64 179 IPR000782 -
Lja6g1247 409 SUPERFAMILY FAS1 domain 185 322 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1247 Lja-Chr6 36490481 36491740 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1247 - - gmx:100810878 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1247 6 36490481 36491740 Lja6g1247 6 36490481 36491740 ECH