Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1245 ATGGTCTCAGCTAGTCCAGCACCACCATTAGGGGACCATTTATGTGAAAATGGATTTGAATATGTTAAAATTCTCCCTGCCATTAATGATGCCCATGGAGGAGTCATTGTAGACTTGAAGGAGGCTATGGACCCTCAAGTTTTTGCTGCTTTGCTTAGATCTTCACTTTCACAATGGAAGCAACAGGGAAAAGATGGAGTCTGGATCAAGTTACCTATCGAGCTTGTTAATCTTGTTGAAACTGCAGTCAAGGAGGGTTTCTGGTACCACCATGCTGAGCCAAGTTATGTGATGCTAGTTTACTGGATTCCTAAAATAGGCTGCACAATCCCTCCAAATGCTTCCCATTGTGTAACAGTTGCTGCTATTGTCTTAAATCATAAGAAAGAGGTGCTTGTAGTCCAGGAAAAAAGAGGCATATTCCACGGGATTGGCGTTTGGAAGCTACCTACTGGAATAGTTGATCCGGGTGAGGACATTTTTGCAGCAGCTATTAGAGAAGTAAAAGAAGAGACAGGAGTTGATACAGAATTTGTGGAAGTACTAGCATTCAAACAGGCACACAATTCATTCTTTGGGAAGTCAGGTCTATCTTTTCTTTGTACGCTGCGTCCTCTTTCTTTTGACATCAAAAAGCAAGAGCTGGAAATTGAGGCAGCTCAGTGGATGCCATTTGAGGAATTTGCTGTTCAACCTTTTAATCAGAAGCATGAGCCCTTCAAGTACATAATTGAATTATGCTTGGCAAAGGAAGAAAGGTTCTATACTGGATTCTCTCCACGGCCTGTCTCATCATTTTTTGCTGAGGAGTTGAATTATCTATACTTGAATAGCCAAGATCTTGACAAGTCTTCCAAGTCAAGTCTTGGTCATCCACTGAAGTTGATTTTTATATTTCTTTTCTGTCAAATATTTGTTGTATGTTTATTTCTCCACATGAGAAATACTTACAATACTCTCTGA 963 0.4029 MVSASPAPPLGDHLCENGFEYVKILPAINDAHGGVIVDLKEAMDPQVFAALLRSSLSQWKQQGKDGVWIKLPIELVNLVETAVKEGFWYHHAEPSYVMLVYWIPKIGCTIPPNASHCVTVAAIVLNHKKEVLVVQEKRGIFHGIGVWKLPTGIVDPGEDIFAAAIREVKEETGVDTEFVEVLAFKQAHNSFFGKSGLSFLCTLRPLSFDIKKQELEIEAAQWMPFEEFAVQPFNQKHEPFKYIIELCLAKEERFYTGFSPRPVSSFFAEELNYLYLNSQDLDKSSKSSLGHPLKLIFIFLFCQIFVVCLFLHMRNTYNTL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1245 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 113 131 IPR003293 -
Lja6g1245 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 75 93 IPR003293 -
Lja6g1245 320 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 201 225 IPR003293 -
Lja6g1245 320 ProSitePatterns Nudix box signature. 152 173 IPR020084 GO:0016787
Lja6g1245 320 Pfam NUDIX domain 118 240 IPR000086 -
Lja6g1245 320 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 117 253 - -
Lja6g1245 320 ProSiteProfiles Nudix hydrolase domain profile. 115 247 IPR000086 -
Lja6g1245 320 PANTHER NUDIX HYDROLASE 2 19 284 - -
Lja6g1245 320 Pfam Nudix hydrolase domain 26 103 IPR040618 -
Lja6g1245 320 CDD Nudix_Hydrolase_12 116 247 - -
Lja6g1245 320 SUPERFAMILY Nudix 83 249 IPR015797 -
Lja6g1245 320 Gene3D - 13 106 - -
Lja6g1245 320 PRINTS NUDIX hydrolase family signature 161 176 IPR020476 -
Lja6g1245 320 PRINTS NUDIX hydrolase family signature 147 161 IPR020476 -
Lja6g1245 320 PANTHER NUDIX HYDROLASE RELATED 19 284 IPR003293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1245 Lja-Chr6 36476935 36480571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1245 - - gmx:100783941 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1245 6 36476935 36480571 Lja6g1245 6 36476935 36480571 ECH