Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1241 ATGAAACCATGGAATCTTCATCTTCCTTCGTCACCACTCTCACGTGCGCTATCACGTGCACTCAGCTCCGCCGCATCGGCGTTTCCCCTGAAGACGGTAACCACCGCCAACTTCGAACCCTCGCTGGTGGATCTCCGGCGCCACGTCCGCTCCTCTGACTTCGTCGCCATCGACCTCGAGATGACCGGCATCACCAGCGCCCCCTGGCGCGAGTCCCTCGAGTTCGATCGCTCCGACGTCCGCTACCTCAAGGTCAGAGACTCCGCCACCAGGTTCGCCGTCGTTCAATTCGGCGTCTGCCCCTTCCGATGGGACCCCTCCAACAACTCCTTCCTCGCTTATCCGTACAATTTCTATGTGTTTCCACGCCAGGAGCTTGCGGGTTTTGGTCCATGTAATGAGTTTCTCTGCCAGACTACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGTCTGCATACATGAAGGAATATCTTATTTATCCAGAGAGCAAGAAAGGGAAGCAATAAGGAGGTTGAATTCGACTTACGATAGTGAGAGGCCAGACATTTGTAAATTAAAAGATGTCAGGGACATACCATTGCTCAGCATGGCAGACACTTTGTTCACTGCACGAATGAAAAGTAAGTTCAGTGAATGGCGTGATGGGTTATTACATGAGCAAAATCAAGAAGACAGAATTCAAAAAATTTCAGAAGACTCAAAAGAACAATTTCAAGTGATGTTCTTTAAGTTGCAGCCTGCTCTTAGGCTTAATGGATTCACCTCTCATCAGCTTAAATTGATTCAGTTGGTCATCAGAAAGAACTTCAAAGATCTTTATTATGTCAGTGTGAACACTGAGGCTTCTGGTTCACAGCAAATTGTTCTATATACAGACTCAAAGGATGAACTGAACTTAATTATGAAGGAGGTGAAAGATGAAAATCACAGGATGGAAGAAATGAAGATCCAGACTGCAGTTGGTTTTCGTCATGTTATTGATCTCCTTTCATCAGAACAGAAGTTGATAGTTGGCCACAACTGTCTTCTGGATATTGCTCATGTCTACAACAAATTTATCAGACCTCTTCCTGAGACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCAAACATTGTTGATACCAAAATACTCCTAAACACTAATTCTATGCTCCAAGGAAGGATGAGAGGGTCCAGAAAATCACTGGCCTCTGCATTTTCTTTGTTTTGTCCACAAATTGCTGCAGGCTCAGGAAACACTGAGCCAGGTTCACCATCACATGTGAAAGTGGACATTGAAGTTGATGATTCAAGATCATCCACCTGGAACCCTGGAGGTAAGCATGAAGCAGGGTATGATGCTTTCATGACCGGATGCGTCTTCACCCAATTATGTAGTGATTTAGGAGTGGATTTTAAACTCCATGAATCTTCAAAAGAATTAGCCCTTAATGAGAAACTACAGAAGTACGTTAATCATCTATATATTAGTTGGATGCATGGAGACATTATTGATCTAAGTACTGGTGATAAGGTTGCAGATTCTTCACCGAGCTATAGCCTCAAGAGGCGGTACCCACAAATTTTGTTTGAGAACATTGTTATTATGTGGGGGTTTCCTTCTAAGCTCAAGGCAAATGAAATAAGAAATTGTATATCTCTAGTTTTTGGTTCAAGTTCTGTAGTTTCTATCTACCACTTGGACTCAACTGCAGTGTTTGTCCAGTTTAGCAAAACAAATCTGGTTTCTGATTTTCTTTTATTGAAGGACACCTTAGAGAGAAGTGATGGTCCAATCTTGGTTTTGCATCCGCTGGCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGATGCTTACAGAGAAATTTGTGGTTCAACCTTATCAGAAAGCCTGTTTGCTGATCAGGCCAAGGCAGTTGGTATAACATGGAAGACCAAATTGATGGAATGCAAGGTAACATTGGGGAGCGAAGAACATGAAAATCAAAGTGAACAAGGTAATGTGAATACAGCTATGAAGTTTGTAGGAAAGACCAAGCCAAACACAATAGATCAGTTGAGAAATTCACCACCTCATGGGCAGGTCTCACCTTTTGAGATTGAAGATTCTTGTGCCGCAGAAGCCAACTTGTGA 2142 0.429 MKPWNLHLPSSPLSRALSRALSSAASAFPLKTVTTANFEPSLVDLRRHVRSSDFVAIDLEMTGITSAPWRESLEFDRSDVRYLKVRDSATRFAVVQFGVCPFRWDPSNNSFLAYPYNFYVFPRQELAGFGPCNEFLCQTTSMDFLAKYQFDFNVCIHEGISYLSREQEREAIRRLNSTYDSERPDICKLKDVRDIPLLSMADTLFTARMKSKFSEWRDGLLHEQNQEDRIQKISEDSKEQFQVMFFKLQPALRLNGFTSHQLKLIQLVIRKNFKDLYYVSVNTEASGSQQIVLYTDSKDELNLIMKEVKDENHRMEEMKIQTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHVYNKFIRPLPETPEEFVASVNKCFPNIVDTKILLNTNSMLQGRMRGSRKSLASAFSLFCPQIAAGSGNTEPGSPSHVKVDIEVDDSRSSTWNPGGKHEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKELALNEKLQKYVNHLYISWMHGDIIDLSTGDKVADSSPSYSLKRRYPQILFENIVIMWGFPSKLKANEIRNCISLVFGSSSVVSIYHLDSTAVFVQFSKTNLVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTCAANYDAYREICGSTLSESLFADQAKAVGITWKTKLMECKVTLGSEEHENQSEQGNVNTAMKFVGKTKPNTIDQLRNSPPHGQVSPFEIEDSCAAEANL* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1241 713 Pfam CAF1 family ribonuclease 33 461 IPR006941 -
Lja6g1241 713 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 29 647 - -
Lja6g1241 713 Coils Coil 298 321 - -
Lja6g1241 713 Gene3D - 288 511 IPR036397 GO:0003676
Lja6g1241 713 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 29 647 - -
Lja6g1241 713 SUPERFAMILY Ribonuclease H-like 31 472 IPR012337 -
Lja6g1241 713 Gene3D - 32 183 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1241 Lja-Chr6 36332285 36336959 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1241 K01148 - gmx:100784997 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1241 6 36332285 36336959 Lja6g1241 6 36332285 36336959 ECH