Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1240 ATGTCGGACAAGGGTCGTCCACTACCAAAATTTGGTGAATGGGATGTCAATGATCCGGCCTCTGCTGAGGGGTTCACAGTGATTTTCAATAAGGCCAGGGATGAAAAAAAGACTGGTGGCTCTGAGTCACCAGGAAAGACTGCCACTAAAACTCAAAGCAAACCTGCATTAGATCCTGGCAAACCTCAAAGTAAAAAATGGTTTTGCTGCGTAAACCCTCCTGCAGAATCATAG 234 0.4573 MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKTQSKPALDPGKPQSKKWFCCVNPPAES* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1240 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Lja6g1240 77 MobiDBLite consensus disorder prediction 42 58 - -
Lja6g1240 77 MobiDBLite consensus disorder prediction 32 77 - -
Lja6g1240 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 71 IPR040387 -
Lja6g1240 77 PANTHER PROTEIN NOI4 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1240 Lja-Chr6 36311243 36314960 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1240 - - gmx:100305826 137.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1240 6 36311243 36314960 Lja6g1240 6 36311243 36314960 ECH
Lja6g1240 6 36311243 36314960 Lja6g1240 6 36311243 36314960 PCT