Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1238 ATGAGCAGCGTTGATGAGTGTTCTCCATTGTTTGAGACAACAAGGGGCAGAGGAAGGTTCATCTATAGACCCTTTGCAATCTCATTGTTTGTGGCTATATGCTTCATCTGGGCTTATAGATTCACCCATATAACAACAAGAACCGGTGAAGAAGATGCAACAAAATATTGGGCATGGCTTGGTTTGCTTGGAGCTGAGCTATGGTTTGGTTTCTACTGGATCCTCACCCAAGCTCTCAGGTGGAACCTTGTGTACAGGCAACCCTTCAACACCAGGCTCTCTCAAAGGTACGAGGATGTGTTGCCGGCGGTGGACATTTTTGTGTGCACGGCGGACCCAGAGATTGAGCCGCCGATGATGGTGATTAACACGGTGCTGTCTATGATGGCATATGATTATCCAGCTGAGAAGATGAGTGTTTATCTTTCAGATGATGCAGGGTCAGAAATCACATTCTATGCTCTGCTAGAGGCGGCTAGCTTTGCAAAACATTGGGTTCCTTTCTGCAAGAGATTCAAAGTGGAGCCCAGATCACCTGCTGCATATTTTAATAGCATTATCTCAACTACTGCTTTCCCAAGTGATGATCACACTGAACAAGCCAAAGAGTTGGCAGATATAAAGAAATTGTACGAAGAAATGGAAAATCGAATTGAAGATGCAACCAAGTTGAATGAAGTACCTAAAGAAGCAAGTTTAAAGCATAGCGGATTTTCTCAGTGGGATTCATATTCTTCTCGACGTGATCATGATACAATTCTTCAAATACTACTTCATAAAAACGACCCTAGTAACTCTAAAGATGTTGATGGGTTCGTTTTGCCATCTTTGGTGTATTTGGCTCGTGAAAAGAGGCCCCAATTTCCTCACAACTTCAAAGCTGGAGCTATGAATTCATTGCTGAGGGTGTCCTCCAATATTAGCAAGGGGAAAATCATTCTAAATGTAGACTGTGACATGTACTCAAACAATTCACAATCTGTGAGAGATGCTCTCTGCATTTTCATGGATGAAGAGAAAGGCCATGAAATTGCTTTTGTGCAGTTTCCCCAGAATTTTGATAATGTCACCAAGAACGATTTATATGGGAGTGCTCTACTACCAATTAGCGAGGTGGAGTTCCATGGTGTAGACGGTTATGGAGGCCCTTTGTACATAGGAACTGGCTGCTTTCACAAGAGAGACAGTTTCTGTGGGATGAAGTTCAGTGATGAATACAGGAATGACTGGAAGAGTGAAGAAAACCAGTTCATAGAAGCAACCTTGAAAGAACTAGAAGAAAGATCAAAGCCTTTTGCAAGTTGCACCTATGAGCAAAACACACCATGGGGAAAAGAGATGGGTTTAAAATATGGGTGTCCAGTGGAAGATGTGATAACAGGATTGTCCATACAGTGCCAAGGATGGAAATCAGTGTACTACAACCCACCAAGGAAGGCTTTCTTGGGTGTGGCTCCTACCTCCTTGCTTCAAGTGCTGGTTCAGCACAAGAGATGGTCTGAAGGACAGTTGCAAATTTTGTTTTCGAAGTATAGTCCTGCTTGGTATGCTTTTGGAAGGATCAGTTTGGGCCTCCAAATGGGGTATTGTACTTATAACTTATGGGCACCTAACTGTTTAGCAACACTGTATTATTCCATTGTCCCTTCACTCTACCTCCTTAAAGGCATTCCCTTGTTTCCAAAGATGTCAAGCCTATGGTTCATTCCTTTCGCATATGGAATAGTAGGGGAAACTACTTATAGTCTGTTGGAGTTTATATTCTCTGGAGGAACATTTCAAGGTTGGTGGAATGACCTGAGAATATGGCTATACAAGAGAACAAGCTGTTACCTATTTGCCTGCATTGACACCATCTTAAAGCTTTTGGGGTTCTCAGACTCAGCCTTCACAATCACAGCTAAGGTTTCAGAAGAAGATGTTTCCAAGCGCCATGAGAAAGAAATCATGGAGTTTGGAACCTCTTCTTCAATGTTCACTTTATTAGCAACCCTTGCACTGCTAAATTTGTTTTGCTTTCTTAGTGTTTTGAAGGATTCAGTCCTCAGTGAAGGCTACCTTGACAAAATGGTATTGCAAATTATGTTGTGTGGTTTTCTTGTTCTCATCAATTTGCCTCTATACCAAGGTCTTTTTTTGAGGAAGGACAAAGGTAGATTACCAAAGACTCTTGCCATCAAATCAACAGCATTGGCTCTAGCAGTATTTGCCTACTTCAGATCTGCATGA 2229 0.4208 MSSVDECSPLFETTRGRGRFIYRPFAISLFVAICFIWAYRFTHITTRTGEEDATKYWAWLGLLGAELWFGFYWILTQALRWNLVYRQPFNTRLSQRYEDVLPAVDIFVCTADPEIEPPMMVINTVLSMMAYDYPAEKMSVYLSDDAGSEITFYALLEAASFAKHWVPFCKRFKVEPRSPAAYFNSIISTTAFPSDDHTEQAKELADIKKLYEEMENRIEDATKLNEVPKEASLKHSGFSQWDSYSSRRDHDTILQILLHKNDPSNSKDVDGFVLPSLVYLAREKRPQFPHNFKAGAMNSLLRVSSNISKGKIILNVDCDMYSNNSQSVRDALCIFMDEEKGHEIAFVQFPQNFDNVTKNDLYGSALLPISEVEFHGVDGYGGPLYIGTGCFHKRDSFCGMKFSDEYRNDWKSEENQFIEATLKELEERSKPFASCTYEQNTPWGKEMGLKYGCPVEDVITGLSIQCQGWKSVYYNPPRKAFLGVAPTSLLQVLVQHKRWSEGQLQILFSKYSPAWYAFGRISLGLQMGYCTYNLWAPNCLATLYYSIVPSLYLLKGIPLFPKMSSLWFIPFAYGIVGETTYSLLEFIFSGGTFQGWWNDLRIWLYKRTSCYLFACIDTILKLLGFSDSAFTITAKVSEEDVSKRHEKEIMEFGTSSSMFTLLATLALLNLFCFLSVLKDSVLSEGYLDKMVLQIMLCGFLVLINLPLYQGLFLRKDKGRLPKTLAIKSTALALAVFAYFRSA* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1238 742 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 94 182 IPR029044 -
Lja6g1238 742 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 251 407 IPR029044 -
Lja6g1238 742 Pfam Cellulose synthase 432 734 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja6g1238 742 Pfam Cellulose synthase 104 408 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja6g1238 742 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN E1 7 737 - -
Lja6g1238 742 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 737 - -
Lja6g1238 742 Coils Coil 197 224 - -
Lja6g1238 742 SUPERFAMILY Nucleotide-diphospho-sugar transferases 107 556 IPR029044 -
Lja6g1238 742 Coils Coil 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1238 Lja-Chr6 36282110 36301171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1238 9 734 Glycosyltransferase AT1G55850 57.750 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1238 - - gmx:100815825 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1238 6 36282110 36301171 Lja6g1238 6 36282110 36301171 ECH
Lja6g1238 6 36282110 36301171 Lja6g1238 6 36282110 36301171 PCT