Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1235 ATGGGTGTTGGAAATCAGGAGGCAATCAAGCAGTTGCAGACCCTGATGGAAAATGTGGATGAGCAGCAGAAGAACACATTCCAGATTATGCACCAGGGCTATGCAAATGAAACATTAGCAAGGTTTCTCAACGCTAGGGACTGGAATGTTGCCAAAGCCCATAAAATGTTAATTGATTGTATACACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAGAGAAGCCTATCCCTGTGGATTTGTACAGAGCTGTGCGAGATTCTCAACTCATAGGAATTTCAGGTTACTCGAATGAGGGTCTACCAGTCATTGCTGTGGGTGTTGGGCTCAGTACATATGACAAAGCATCTGACAAACACTATATACAGTCACACATCCAAATTAATGAATATAGAGATCGTGTGGTCTTGCCAACAGCTACAAAGAAGCATGGACGATACATTGGCACCTGTGTGAAAGTCTTGGATATGTCTGGTTTAAAATTCTCAGCACTGAATCAATTGAGGCTTCTGACTGCTATATCTACAGTAGATGACTTGAACTACCCAGAAAAGACAGACACATACTATATAGTTAATGCACCATATGTTTTCTCAGCATGTTGGAAGGTTGTGAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCAAGGTTCCGGGAAGGAGGAATTACTGAAGATAATGGACTATGCATCCCTCCCACACTTTTGCAGAAAAGAAAATTCCAGGTCATCCCGACATCACGCTGCAGAAACAAACACCGACAATTGTTTCTCCTTTAATCATGTCTTCCATCAACAACTCTATAACTTCATCAAGAAGCAAGCTATGATTATGCAGTCCATATCACCAGTCAGACAGGGGTCTTTCTATGTAGACATACCTGAGCCAGATCCTGATGATGCCAAAATAGCCAAGACCATAGAAGCTGAGCTCCACAAATTGGAAAATCAGAATGGCTTTACCAACTCACTAAATGGTCTTGCTATTAATGGGCACTGA 1014 0.4181 MGVGNQEAIKQLQTLMENVDEQQKNTFQIMHQGYANETLARFLNARDWNVAKAHKMLIDCIHWRVENEIDKVLEKPIPVDLYRAVRDSQLIGISGYSNEGLPVIAVGVGLSTYDKASDKHYIQSHIQINEYRDRVVLPTATKKHGRYIGTCVKVLDMSGLKFSALNQLRLLTAISTVDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGSGKEELLKIMDYASLPHFCRKENSRSSRHHAAETNTDNCFSFNHVFHQQLYNFIKKQAMIMQSISPVRQGSFYVDIPEPDPDDAKIAKTIEAELHKLENQNGFTNSLNGLAINGH* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1235 337 CDD SEC14 82 240 IPR001251 -
Lja6g1235 337 Coils Coil 5 25 - -
Lja6g1235 337 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 238 IPR001251 -
Lja6g1235 337 PANTHER - 1 336 - -
Lja6g1235 337 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Lja6g1235 337 SMART sec14_4 85 246 IPR001251 -
Lja6g1235 337 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Lja6g1235 337 SUPERFAMILY CRAL/TRIO domain 80 240 IPR036865 -
Lja6g1235 337 SUPERFAMILY CRAL/TRIO N-terminal domain 9 75 IPR036273 -
Lja6g1235 337 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Lja6g1235 337 Gene3D - 4 261 IPR036865 -
Lja6g1235 337 PANTHER OS09G0258000 PROTEIN 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1235 Lja-Chr6 36238901 36243139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1235 1 330 Acyl Lipid Metabolism Gene Families AT5G47730 63.444 3.25e-161 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1235 - - gmx:100817955 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1235 6 36238901 36243139 Lja6g1235 6 36238901 36243139 ECH
Lja6g1235 6 36238901 36243139 Lja6g1235 6 36238901 36243139 PCT