Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1234 ATGAAAGAGGAGTTAATGTCAGAGGGTGAAGAACAAGAACAGAGCAATGGAGGAATACTTGACTACATAATGAACTTGGAGAGCGTTCCACAGAAGCTACCTCCACACCTCGAGCTTCTCAGGACTCGCGTCCTTTGCAACGTCGATGCTCCTCAGCATACAGATACCATCCAGTATTCTGGTGCTTATGCAGCGCTAGGTGTTGACAATAGTTTGCGGTTTGATGATTTCTGTAAGAACTTCAAGGTTGAGGTGAAACGGTTGACGGATGATGAAATGGAGTTTGATATGATTGGTATTGATCCAGCAATTGCCAATGCATTTCGACGTATCCTTATATCAGAGGTCCCAACAATGGCTCTTGAAAGAGTTTATATTGCAAACAATACATCACTTGTACAAGATGAAGTTCTTGCTCATAGATTGGGCCTCGTTCCAATCAATGCTGATCCAAGGTTATTTGAATATCCAGATAATGCGGGAGAGAATAATGAAAAGAATAGCATTGTCTTCAAACTACATGTTCATTGTAAAAAGGGTCAGCCTCGTATTACTGTGTTATCGGATCAGCTGAAGTGGTTACCTAATGGGAGTGAGCTTATCGCTGAAGATACCAAACCAAATACAGATTCAAAACCAAAAACATTTACTTCTTTTACCTGCAGCCAAGACTCCCTTCCTGAATTTTCCAGCAATCCACCTGGTCCTAGATATTTGGATATTATAATAGATAAACTTGGACCTGGTCAGGAAATCGAACTTGAAGCTCATGCAGTTAAAGGCATCGGTAAGACACACGCAAAATGGTCACCGGTTTCCACTGCTTGGTATAGGATGCTTCCAGAGGTTGTACTCTTGGAAGATGTTCAGGATGAGTTGGCTGAAGAACTAAAAAATAAATGTCCACTTAAAGTATTTGATATTGAAGATATCGGAAAAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGACTGCACTTTGTGTAGGGAATGCATCAGAGGTGGTAAAGAATGGGAAGATCGTGTATCATTACGTCGTGTCAAAGATCATTTCATTTTCACTGTTGAATCAACTGGAGCTTTACCACCGGAGCTGCTATTTACTGAAGCTGTGAAGATTCTGGAAGATAAGTGTGAACGCGTGATTACTGAGCTGTCTTGA 1164 0.4141 MKEELMSEGEEQEQSNGGILDYIMNLESVPQKLPPHLELLRTRVLCNVDAPQHTDTIQYSGAYAALGVDNSLRFDDFCKNFKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVLAHRLGLVPINADPRLFEYPDNAGENNEKNSIVFKLHVHCKKGQPRITVLSDQLKWLPNGSELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQEIELEAHAVKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELKNKCPLKVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKDHFIFTVESTGALPPELLFTEAVKILEDKCERVITELS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1234 387 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 94 379 IPR011263 GO:0003899|GO:0006351
Lja6g1234 387 SMART rpoldneu2 92 385 IPR011263 GO:0003899|GO:0006351
Lja6g1234 387 Gene3D - 83 378 IPR036603 GO:0006351|GO:0046983
Lja6g1234 387 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 82 386 IPR022842 GO:0003899|GO:0006351
Lja6g1234 387 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 117 271 IPR036643 -
Lja6g1234 387 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 106 146 IPR001514 GO:0003677|GO:0003899|GO:0006351
Lja6g1234 387 CDD RNAP_I_II_AC40 81 385 IPR033901 GO:0001054|GO:0001056
Lja6g1234 387 Pfam RNA polymerase Rpb3/RpoA insert domain 124 270 IPR011262 GO:0003899|GO:0006351|GO:0046983
Lja6g1234 387 PANTHER BNAA01G22480D PROTEIN 23 387 - -
Lja6g1234 387 Gene3D - 118 267 IPR036643 -
Lja6g1234 387 SUPERFAMILY RBP11-like subunits of RNA polymerase 79 386 IPR036603 GO:0006351|GO:0046983
Lja6g1234 387 PANTHER DNA-DIRECTED RNA POLYMERASE 23 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1234 Lja-Chr6 36222734 36227650 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1234 K03027 - gmx:100786622 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1234 6 36222734 36227650 Lja6g1234 6 36222734 36227650 ECH