Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1220 ATGTTGCAGTGTTTAGAGGGACTTAAGCCTTTACTTGCTTCGCTATTGCGTTGTTGTGACATTGATATATATAACCAGCCAAGAGGCCTTGAAGATCCTGAACTTCTTGCTAGGGAGACAGTGTTCAGTGTAAGTGAAATAGAAGCACTATATGAACTCTTCAAAAAGATCAGCAGTGCTGTAATTGATGATGGGCTGATAAACAAGGAAGAGTTTCAATTGGCATTGTTCAAGACGAATAAAAAAGAAAGCTTGTTTGCTGATCGGGTATTTGATTTGTTCGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGCGCTCTCTCTGTTTTCCACCCAAATGCCCCTATCGACGATAAGATCGAGTTTTCTTTTCAACTGTATGATCTGAAGCAGCAGGGTTTTATTGAAAGGCAGGAGGTGAAGCAAATGGTAGTTGCTACCCTGGCAGAATCTGGTATGAATCTATCAGATGATGTTATAGAAAGTATAATTGACAAGACTTTTGAGGAAGCAGATACAAAGCATGATGGCAAGATTGACAAGGAGGAATGGCGGAACCTTGTTTTGCGCCACCCGTCACTTCTGAAGAACATGACCCTTCAATATCTCAAGGACATCACCACAACATTCCCAAGCTTTGTATTCCATTCACAAGTAGACGATACTTGA 681 0.4097 MLQCLEGLKPLLASLLRCCDIDIYNQPRGLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1220 226 PRINTS Recoverin family signature 183 203 - -
Lja6g1220 226 PRINTS Recoverin family signature 137 155 - -
Lja6g1220 226 PRINTS Recoverin family signature 90 111 - -
Lja6g1220 226 PANTHER CALCINEURIN B-LIKE PROTEIN 3 ISOFORM X2 1 226 - -
Lja6g1220 226 SMART efh_1 123 151 IPR002048 GO:0005509
Lja6g1220 226 SMART efh_1 167 195 IPR002048 GO:0005509
Lja6g1220 226 SMART efh_1 86 114 IPR002048 GO:0005509
Lja6g1220 226 Gene3D - 32 226 - -
Lja6g1220 226 SUPERFAMILY EF-hand 33 218 IPR011992 -
Lja6g1220 226 PANTHER CALCINEURIN B 1 226 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja6g1220 226 Pfam EF-hand domain pair 122 190 IPR002048 GO:0005509
Lja6g1220 226 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Lja6g1220 226 Pfam EF-hand domain pair 64 109 IPR002048 GO:0005509
Lja6g1220 226 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Lja6g1220 226 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1220 Lja-Chr6 35972257 35980436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1220 1 226 EF-hand Containing Proteins AT4G26570 88.696 2.22e-149 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1220 K06268 - gmx:100820101 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1220 6 35972257 35980436 Lja6g1220 6 35972257 35980436 ECH