Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1202 ATGGCTGCTCCCAATCAACAACCACCACCACCACCACCCACCTTCGACATGCACTCCTTCTTCAACCCTCCAAACCCTAACCCTAACAACCACCTTGCTTCTTCCCCATTCCCTTCCTCCGCCCCACCTCCTCCGTCCTCCTCCGCCTCCTACCCTCCTCCCGCCGGCCCCTTCTCCGCCGCGCCGTACTTCCCCTTCGACCACCACCAGCACTTCCCGCTACACCCCCATCACTACCTCCAGCAACAGCAACAGCAACACCAACAGCTGCAACAACACCGTTCCCTCTCCTTCCCAACTCCGCCTCTCCAACCCCAGCCTATACCTCCGCCTTCCAACCCCAACGCTGGCGCCAGCCTCATGGCTCTCCTCAGCGCCAATCCTCCTATGCAACCCCAGCAGCAGCAGCAGCCGTTTTCCGATTTCGCCGCCAGTTCCCCCCACGCCCCGCCTTCCGTGGGCGCACTGACAGCTGCCAATGCCGCTGCCGCCGCGCTGATCCGGCTGCCTAGCAGTAAGCTCCCCAAGGGGAGGCATTTGACTGGGGAGCACGTTGTGTACGACGTCGACGTTAGGTTGCCCGGTGAGGTGCAGCCCCAGCTCGAGGTCGCGCCCATCACTAAGTACGGGTCTGATCCTAACCCGGTTCTGGGTCGGCAGATTGCGGTGAATAAGTCGTATATATGTTATGGGTTGAAACAGGGGAACATCAGGGTGCTCAATATTCACACTGCTGGGAGATCCTTGCTCAGAGGCCACACTCAGAGGGTCACAGACTTGGCATTCTTTGCCGAAGATGTTCATCTCTTGGCAAGTGTTTGCATAGATGGCCGTGTCTATGTGTGGAAGATCTCTGAAGGTCCCGATGATGAAGATAAGCCTCAAATAACTGCTAATATTGTTATTGCTATCCAAATAGTGGCAGAGGAGAAAGTTGAACACCCTCAAATTTGCTGGCATTGCCACAAACAAGAGATTTTGATAGTTGGTATGGGAAAACATGTGCTGAGAATTGACACAACAAAAGTTGGAAATGGTGAAGCCTTTTTGGCTGAGGATCCTCCTAAGTGTCCTCTTGACAAACTCATTGAGGGGGTTCAGCTTGTAGGAACACATGATGGGGAGGTGACTGATTTGTCAATGTGCCAATGGATGACAAATCGATTGGTATCTGCATCTCAGGATGGCACGATAAAAATATGGGAAGATCGGAAGATGCAACCTCTTGCGATTTTGAGACCACATGATGGCCATCCTGTATTTTCTGCTACATTTTTTACTGCTCCGCACCGGCCTGATCATATTGTCCTTGTCACAGCAGGACCACGAAATCGGGAAGTGAAGCTTTGGGTCGCAGCAAGTGAAGAAGGTTGGCTTCTCCCTAGTGATGCCGAGTCCTGGAAATGCACTCAGACATTGGAGTTAAAGAGTTCTGCTCAACCATCTCTCAAGGATGCGTTCTTTAATCAAGTTGCAGCACTACCTCATGCAGGTCTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCACTTAGAATATGGTCCTAATCCCGAATCAACACGAATGGATTATATAGCTGAGTTTACTGTGACCATGCCCATTCTGAGTTTTACTGGAACAAGTGATGTATTACCTCATGGTGAACATATTGTTCAGGTTTATTGTGTTCAGACACAGGCTATTCAGCAGTATGCTTTGGATTTAGTACAATGCTTGCCTCCGCTGTTGGAAAATGTGGGACTAGAGAAGTCAGATTCCAGTGTTTCCCGAGATGCAATGACTGCTGAAGGGTTCACCTCTTTAGACTCATCTGAAATGTCTTTAGCCAATTCTGCTCCCAAAACAATGATACAGGCAAGCGGCACTGAGAGTGGTCTTGTGGCAAGATACCCTTTAAGCTCTGGCCATATTGACTCGACTATGTCTAAAGATATCAGCAGTTCAAATATTGATGCTAAATCTGTGACATTGGCTTCTTCTAGTAGTGATGCTGATATTGTCTGCGTTCCTTCTCCACCTCTTCCTTTGAGCCCAAGGTTGTCCAGGAAGCTTTCTGATTTCAGGAGTCCACAGTCTAATTTGGGTGATCATGTTGTGGACCGACCTGTTAATGATTATTCAGTTGACAGACAAATGGATACCATTCACAGGAACTTGTCTGACCCATTGAATAATGATGAAAAGAAAATCAATCAGGATGACATTTCTAGTGTACCTAATCCTTCTGCCATGTTTATGCAACCAACTCATCTGGTTACACCGTCCGAGTTCGTAAAAGCCGGTTCTTCCTCTGAGGCTAATATTATTGATAAAAAGAATGAGGGAGAAACAATGATCCAGGACATAGTGGACGTGGGTAATGCTGAAGTGGAAGTGAAAGTGGTAGGTGAAACAAGATCTAATCAAAGCGATGACATTGGCCAGCAGGGGTCTCAACAAAACCCACTTTACGATAATAAAGAAAAATTATTTTGCTCTCAGGCTTCAGATCTTGGTATTGAGATGGCTCGTGAATGTTGTGCGATATCTGGGGAAACTTGTATTACGGAGGAACCTGGACAAATTGATTCTATTGTAGGGGACTCGCTGGCCCAACCTTCTAACGGTGGCCATGGAATCCAAGACATGACAAAAGATGTCCATGAGAAGGTTTCTGACTCATCTACATCCATGGTTGTACCACCATCACCTGCACCTAATACTAAAGGGAAGAGGCAGAAGGGTAAAAATTCTCAAGTATCAGGCCCATCTTCCCCATCTCCGAGTGCATGCAATTCAACTGATTCGTCCAATGAACCAAATGGAAGTTCATCCCTCCAATCTACTGAAAACGCTTCTCAAATTCTGGCAATGCAAGAAACGCTCAATCAGTTATTGACGATGCAAAAAGAGATGCAGAAACAAATGACTATGATGGTTTCTGTCCCTGTTACAAAAGAGGGTAGGAGGCTTGAGGCTTCCCTAGGGAAAAGCATGGAAAAAGCTGTCAAGATCCATTCTGATATTTTGTGGACTCGATTTCAAGAGGAGAATGCAAAAAATGAAAAGGTGTCACGAGACCGTCTCCAACATATTACGGGTTTGATTAGTAACTTTATGAATAAGGACCTGCCAGCTATACTGGAGAAAACAGTAAAGAAGGAAATTGCTTCTGTTGGACCAGCTGTGGTCCGTGCAATGTCTCCTGCTGTGGAGAAAATAATATCTTCTACTATTATGGAGTCATTCCAGAGAGGAGTTGGTGACAAGGCAGTGAATCAACTGGATAAATCAGTTAATTCAAAACTTGAAGCTACTGTGGCCAGACAAATCCAAGCACAATTTCAGACAACCGGCAAACAGGTGCTTCAGGATGCACTTAGATCCAGTTTTGAAACATCAGCGGTTCCTGCATTTGAGATGACATGTAAAGCCATGTTTGAACAAGTGGATGCGACATTTCAAAAAGGCATGCTTGAACATTCAACTGCGGTGCAACAACGCCTTGAATCTGGGCCTACATCATTGGCAATGGCTCTAAGGGATTCCATTAATTCAGCATCGTCAGTTACTCAAACTTTAAGTAGAGAAGTGCTTGAGGGTCAAAGAAAGCTGATGACACTGGCAATTGCAAGAACAAACTCTGGCACATTAAACCCTCACCCCGTCCAGCTGAACAGTGGTCCTTTGCTTCATGAAAAGGTTGAGGTGCCACTGGATCCGACAAAGGAGCTAGCAAGGTTGATTTCTGAACGGAAATATGATGAGGCATTCACTGTATCTCTACAAAGAAGTGATGTGTCTATTGTATCTTGGTTATGTTCTCAGGTTGATTTACATGGACTTTTGTCAATGGTCCCTCTTCCTTTAAGCCAAGGTGTAGTGCTTTCACTTCTACAGCAGTTGGCTTGCGATATTAACAATGATACTCCCCGAAAGCTTGCGTGGATGACAGATATCGCTGCTGCCATAAATTCATCGGACCCCATGATCACATTGCATGTCCGAGGTATCTTTGAGCAAGTTTATCAAATTTTGAATCATCAACGGAGCTTACCTACAATGACCGGACCTGATCTCTCAAGTATCCGTCTTTTGATGCATGTTGTCAATTCTGTCCTTGTAACCTGTAAATGA 4128 0.4627 MAAPNQQPPPPPPTFDMHSFFNPPNPNPNNHLASSPFPSSAPPPPSSSASYPPPAGPFSAAPYFPFDHHQHFPLHPHHYLQQQQQQHQQLQQHRSLSFPTPPLQPQPIPPPSNPNAGASLMALLSANPPMQPQQQQQPFSDFAASSPHAPPSVGALTAANAAAAALIRLPSSKLPKGRHLTGEHVVYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAGRSLLRGHTQRVTDLAFFAEDVHLLASVCIDGRVYVWKISEGPDDEDKPQITANIVIAIQIVAEEKVEHPQICWHCHKQEILIVGMGKHVLRIDTTKVGNGEAFLAEDPPKCPLDKLIEGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKMQPLAILRPHDGHPVFSATFFTAPHRPDHIVLVTAGPRNREVKLWVAASEEGWLLPSDAESWKCTQTLELKSSAQPSLKDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYIAEFTVTMPILSFTGTSDVLPHGEHIVQVYCVQTQAIQQYALDLVQCLPPLLENVGLEKSDSSVSRDAMTAEGFTSLDSSEMSLANSAPKTMIQASGTESGLVARYPLSSGHIDSTMSKDISSSNIDAKSVTLASSSSDADIVCVPSPPLPLSPRLSRKLSDFRSPQSNLGDHVVDRPVNDYSVDRQMDTIHRNLSDPLNNDEKKINQDDISSVPNPSAMFMQPTHLVTPSEFVKAGSSSEANIIDKKNEGETMIQDIVDVGNAEVEVKVVGETRSNQSDDIGQQGSQQNPLYDNKEKLFCSQASDLGIEMARECCAISGETCITEEPGQIDSIVGDSLAQPSNGGHGIQDMTKDVHEKVSDSSTSMVVPPSPAPNTKGKRQKGKNSQVSGPSSPSPSACNSTDSSNEPNGSSSLQSTENASQILAMQETLNQLLTMQKEMQKQMTMMVSVPVTKEGRRLEASLGKSMEKAVKIHSDILWTRFQEENAKNEKVSRDRLQHITGLISNFMNKDLPAILEKTVKKEIASVGPAVVRAMSPAVEKIISSTIMESFQRGVGDKAVNQLDKSVNSKLEATVARQIQAQFQTTGKQVLQDALRSSFETSAVPAFEMTCKAMFEQVDATFQKGMLEHSTAVQQRLESGPTSLAMALRDSINSASSVTQTLSREVLEGQRKLMTLAIARTNSGTLNPHPVQLNSGPLLHEKVEVPLDPTKELARLISERKYDEAFTVSLQRSDVSIVSWLCSQVDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAAINSSDPMITLHVRGIFEQVYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK* 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1202 1375 MobiDBLite consensus disorder prediction 79 119 - -
Lja6g1202 1375 MobiDBLite consensus disorder prediction 20 36 - -
Lja6g1202 1375 MobiDBLite consensus disorder prediction 79 99 - -
Lja6g1202 1375 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 402 IPR001680 GO:0005515
Lja6g1202 1375 SMART WD40_4 365 402 IPR001680 GO:0005515
Lja6g1202 1375 SMART WD40_4 243 283 IPR001680 GO:0005515
Lja6g1202 1375 MobiDBLite consensus disorder prediction 100 114 - -
Lja6g1202 1375 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 292 IPR001680 GO:0005515
Lja6g1202 1375 MobiDBLite consensus disorder prediction 37 54 - -
Lja6g1202 1375 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 203 319 IPR032401 -
Lja6g1202 1375 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 376 515 IPR032401 -
Lja6g1202 1375 MobiDBLite consensus disorder prediction 1 19 - -
Lja6g1202 1375 MobiDBLite consensus disorder prediction 907 948 - -
Lja6g1202 1375 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 28 1375 IPR045152 GO:0031087
Lja6g1202 1375 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 28 1375 - -
Lja6g1202 1375 MobiDBLite consensus disorder prediction 884 948 - -
Lja6g1202 1375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 402 - -
Lja6g1202 1375 MobiDBLite consensus disorder prediction 1 54 - -
Lja6g1202 1375 Gene3D - 205 555 IPR015943 GO:0005515
Lja6g1202 1375 Gene3D - 1287 1374 IPR044938 -
Lja6g1202 1375 SUPERFAMILY WD40 repeat-like 216 515 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1202 Lja-Chr6 35511641 35520327 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1202 K12616 - gmx:100802374 2011.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1202 6 35511641 35520327 Lja6g1202 6 35511641 35520327 ECH