Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0980 ATGTCGGAGATGGCGAGCACGGATCCCGAGGGAGTAGACGGAGTACGGATGACATGGAACGTGTGGCCCAGCAGCAAAGTCGAAGCAAGCAAGTGCGTGATCCCATTAGCGGCCACCGTCGCCGTGATCCGCCCTCACCCCGACATCCCTCGCCTCCCGTACTCCCCTCTCCGCTGCAAAACCTGCACCTCCGCCCTCAACCCCTTCGCCCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTATCAACGCAACCATTTCCCTCCTCACTACAACGCCATCTCCGAGACCAATCTCCCCGGTGAACTCTACCCTCAATACACCACCGTCGAATACACCCTCCCTCCTCCTCACTCCGATCCTTCCTCCTCCTCCTCCTCCCCGGTGTTCCTCTTCCTCCTCGACACCTGCCTCATCGCCGAGGAGATCGGTTTTCTCAAATCCGCTCTCAGTCAGGCAATTGAGCTTTTACCCGACAATGCCCTCGTCGGTTTCATCTCGTTTGGGACTCAGGTTCAGGTTCATGAATTAGGTTTCTCTGATATCTCAAAGGTTTATGTCTTCCGAGGTTCTAAGGACATTCCCAAGGATCAGATTTTAGAGCAGCTTGGTCTTGCTTCTGCTTCTGCTTCTGCTTCTGCTAGGAGACCGCAGAAAGTTGCACCTTCCTCCAATTCGCTCGTCTCGCGCTTCTTGATGCCTGCGTCGGATTGTGAATACACTCTCAATGCGCTGCTCGACGAATTGCAAACCGATCAGTGGCCGGTTCCACCTGGCCGCCGCCCCGCTCGCTGTACTGGTGTTGCCTTGAGTGTTGCTGCCGGTTTGCTTAGTGCTTGTAATCCTGGGACGGGGGCTAGAATCATAGCTTTGGTTGGGGGACCCTGCACAGAAGGACCCGGCACGATTGTGTCAAAAGACCTGTCAGACCCTGTGCGCTCTCATAAGGATCTCGATAAAGACGCAGCACCATTCTTTAAGAAAGCAGTCAAATTCTATGAGAGTCTCGCGAAACAGCTTGTTAGCCAGGGTCATGTTTTGGATCTTTTTGCATCAGCACTTGACCAGGTTGGAGTTGCAGAAATGAAAGTTGTGGTTGAAAGAACTGGTGGCCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCATGTTTTTGAGGAAGGGGAGCAATCTCTTGGACTTTGTTTTAATGGAACATTTGAGATAAATTGTTCAAAGGAAATCAAAATTCAGGGAATAATTGGACCTTGCACGTCGTTGGAAAAGAAAGAGCCTTCTGTTTCTGATACTGTTATAGGAGAGGGGAACACAACTGCATGGAAGATGTGTGGTCTTGACAAGAGTACGTGCTTGACTGTGTTGTTTGATCTTTCATCAAGTGATCGTTCAAACACTCCAGGTGGTGCCAACCAACAACTGTACCTGCAGTTCCTTACAAGTTACCAGGCGCCAGATGGTCAATTAGTGCTTCGTGTCACAACAGTAACCAGAAGATGGGTAGACAGTTCTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCAGTGGTAATGGCTAGATATGCTTCTCTGAAGATGGAGACTGAGGAAACATTTGATGCCACACGGTGGTTGGATAGGTTCCTCATCCGGCTCTGTTCCAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCGTCGTTTTCGCTGTTCCCCCAGTTTATGTTCAATCTTCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAGACTGCATACTTCCGCATGTTGTTAAACCGGGAAAATATTAGTAATGCAGCCGTCATGATTCAGCCATCTCTAATATCATATTCATTTAATTCACTGCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCCGCAGACCGGATTCTGTTGCTAGATTCATATTTCAGTGTGGTTATTTTTCACGGGATGACAATAGCTCAGTGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCCCAGCTATTACGAGCTCCACATGATGATGCCCAAATGATAATCAGAGAACGGTTCCCTGTCCCTAGATTGGTAGTTTGTGATCAACATGGTTCCCAGGCTAGATTTTTGTTAGCAAAGCTGAATCCCTCAGCAACATATAATAGTGCACATGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA 2307 0.4863 MSEMASTDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCKTCTSALNPFARVDFTAKIWICPFCYQRNHFPPHYNAISETNLPGELYPQYTTVEYTLPPPHSDPSSSSSSPVFLFLLDTCLIAEEIGFLKSALSQAIELLPDNALVGFISFGTQVQVHELGFSDISKVYVFRGSKDIPKDQILEQLGLASASASASARRPQKVAPSSNSLVSRFLMPASDCEYTLNALLDELQTDQWPVPPGRRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPFFKKAVKFYESLAKQLVSQGHVLDLFASALDQVGVAEMKVVVERTGGLVVLAESFGHSVFKDSFKHVFEEGEQSLGLCFNGTFEINCSKEIKIQGIIGPCTSLEKKEPSVSDTVIGEGNTTAWKMCGLDKSTCLTVLFDLSSSDRSNTPGGANQQLYLQFLTSYQAPDGQLVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARYASLKMETEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDAQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0980 768 Pfam Sec23/Sec24 trunk domain 130 395 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lja6g0980 768 SUPERFAMILY Helical domain of Sec23/24 524 626 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lja6g0980 768 CDD Sec23_C 616 736 IPR037550 GO:0030127|GO:0090114
Lja6g0980 768 SUPERFAMILY beta-sandwich domain of Sec23/24 8 523 - -
Lja6g0980 768 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 767 - -
Lja6g0980 768 Gene3D - 53 112 - -
Lja6g0980 768 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja6g0980 768 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja6g0980 768 Gene3D - 10 507 - -
Lja6g0980 768 Gene3D Sec23/Sec24 helical domain 521 765 - -
Lja6g0980 768 Gene3D Severin 626 730 IPR029006 -
Lja6g0980 768 SUPERFAMILY vWA-like 131 396 IPR036465 -
Lja6g0980 768 Pfam Gelsolin repeat 636 724 IPR007123 -
Lja6g0980 768 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 767 IPR037364 -
Lja6g0980 768 Pfam Sec23/Sec24 helical domain 524 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lja6g0980 768 Pfam Sec23/Sec24 beta-sandwich domain 406 510 IPR012990 -
Lja6g0980 768 Gene3D von Willebrand factor, type A domain 130 404 IPR036465 -
Lja6g0980 768 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 627 767 IPR036180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0980 Lja-Chr6 21857795 21864631 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0980 K14006 - gmx:100813940 1352.42