Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0977 ATGTATTCAGATTTTCCTGGTAAATATCAAGATTGGTCAGCCACAGATCCATTAGATCTCTTTCAAGCTCAGGTTTTAAAGAATGAATCAAACCCAAAGGCGCATATTTGTAGGCATTTAAACCAAGAAGCTCGTGGATGCCGTTTTTTGGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAACATATGTTTTGAGGTTATACAATCAACTGGTTTCAATGTAAATGATGTTTATCGTGCACGGTTTTCTTCTGTTACTGAGAAAGATGTCTTGAAGGCTCTAGACAACCTTGTCAGACCCAACAGAGATGAGGCACTGGCAGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGGGTTGCCTTTACTCGATTTCAGACAAGTTTCTTCCAGGGAAAATATGGAAACCTAGACTCCAAAGTCATCTCCTATGGACCATGTCAAACTCCTACTTTAGGATTTTGCGTGCAGCGGTATTTACAAATAAATACTTTCAAGCCAGAAAAGTTTTGGAGTGTGAACCCATACATAGTTCACAGTGGCTATGAAATCCAGCTCGAATGGCAACGTAGTAAATTGTTTGACATAAATGTTGCTACGATGTTTCAAAAGCTGGTTGCCGAGGATGGACTTTTGGAAGTGACCGAAATATCAGAAAAACAAGAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTAAAGGTTGCTTCAAGTGCTCTTGGATTTGGTCCTCATATGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGCTTCATCAGCTATCCACGTACAGAGAGCACAGCATACCCACCTTCATTTGACTTTCGTGGTGCACTCTCTGCACAAGCAAATAATCCAACTTGGGGTAATTATGTGGAAGGGCTACTTACCAATGGTTACCTGAAACCTCGACTTGGAACTGATGTAGGCGACCATCCTCCCATTACTCCAATGAGACCTGCAGCGGAGGATATGTTGGGCAATGATGCTTGGAAGCTGTACCAATATATTTGCCAACACTTCATAGGGACAGTGTCTCCAGACTGCAAGTATGCAAGGAGAAAGGTTGAGTTTTCAATTGGGGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTATCACCAAAGGATTTACGGCTATAATGCCTTGGTTGGCAATAAATGATAAAAATATTCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCAAAGGTGGAGCTCTATGAGGGGACTACAACACCTCCAGATTATCTTACTGAAAGTGAACTGATCTCCCTGATGGAGAAAAATGGAATAGGAACAGATGCATCAATTCCTGTTCATATTAACAACATATGTGAACGGAATTATGTGCAGGTACAAGCGGGCAGAAAGCTTGTCCCGACTACGTTAGGCATAACTTTAGTAAGAGGCTATCAATCAATTGATCCAGACCTCTGCCTGCCCGATATCCGTAGCTTCATTGAGCAACAGATTACTCTTATTGCTAAGGGTCAGATTGATCATCATCGTGTAGTGCAGCATGTAATCCAACAATTCAAGCAGAAGTTTTGTTACTTTGTCAAGAAGATTGAAGCCATGGATGCATTATTTGAAGCACAATTTTCCACACTTGTTGATTCAGGCCGTATTCTTAGTAAATGTGGGAAATGCTTGCGGTATATGAAGTACATTTCTGCTCAGCCCTCACGTTTATATTGCGGTATATGTGAGGAGGTGTATTATCTTCCACAGAAAGGCACAATCAAGCTGTACAAGGAATTGTCTTGTCCTCTAGACAATTTCGAGCTTTTGCTCTGCTCGATGGGCCCAGATGGTAAATCTTTCCCTCTCTGCCCATACTGCTACAGCAATCCCCCATTTGAAGGTATTGAAGCACTCATAAATACGGCGAAAACTAGTACTTCGGGCAAGATTGGCAAGGGAGCTGGCATGCCATGCATCCTATGTCCCCATCCCACTTGCCCAAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGCCCAGAGTGCAGCGGGACACTTGTCTTAGACCCAGTAAGTGCTCCCAAATGGCGACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCACAGGGTGCTCATAGAATTTCCACTACTAAAGAACGGTGCCCTGAATGCGACTCTTCAATCATTGAAGTGGACTTCAATAAGAAAGCAACTCCTCTAGAAGATGGATCCACTTTGCACCGTGGTTGCATTCTTTGTGATGAGTTACTGCATTCCCTTGTGGAGATGAAACATGGGAGAGGCTTCAGGCAGAGTTCACGGGGAAGAGGAAGAGGAGGAAGAAAAGGCGGGTATAGGGGCAGAGGACGCAGGGGTGGATCAATGGTGGACCCAAAAATGAGTTTCCGAGATTTCTAA 2403 0.4299 MYSDFPGKYQDWSATDPLDLFQAQVLKNESNPKAHICRHLNQEARGCRFLVLWLDCDREGENICFEVIQSTGFNVNDVYRARFSSVTEKDVLKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDSKVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSVNPYIVHSGYEIQLEWQRSKLFDINVATMFQKLVAEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYTQGFISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVEGLLTNGYLKPRLGTDVGDHPPITPMRPAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYARRKVEFSIGGESFHCTGQHVITKGFTAIMPWLAINDKNIPSFIKGQKIEVSKVELYEGTTTPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQIDHHRVVQHVIQQFKQKFCYFVKKIEAMDALFEAQFSTLVDSGRILSKCGKCLRYMKYISAQPSRLYCGICEEVYYLPQKGTIKLYKELSCPLDNFELLLCSMGPDGKSFPLCPYCYSNPPFEGIEALINTAKTSTSGKIGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPKWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKATPLEDGSTLHRGCILCDELLHSLVEMKHGRGFRQSSRGRGRGGRKGGYRGRGRRGGSMVDPKMSFRDF* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0977 800 Gene3D Topoisomerase I, domain 3 167 420 IPR013825 -
Lja6g0977 800 Gene3D - 1 101 - -
Lja6g0977 800 Gene3D Topoisomerase I, domain 2 108 522 IPR013824 -
Lja6g0977 800 SMART topIaneu2 219 474 IPR003602 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 256 270 IPR023406 GO:0003917
Lja6g0977 800 PANTHER PROKARYOTIC DNA TOPOISOMERASE 3 777 IPR000380 GO:0003677|GO:0003917|GO:0006265
Lja6g0977 800 SMART topIban2 77 173 IPR003601 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 Pfam Toprim domain 26 85 IPR006171 -
Lja6g0977 800 Gene3D Topoisomerase I, domain 4 227 352 IPR013826 -
Lja6g0977 800 Pfam DNA topoisomerase 101 512 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 PANTHER DNA TOPOISOMERASE 3-BETA-1 3 777 - -
Lja6g0977 800 MobiDBLite consensus disorder prediction 765 783 - -
Lja6g0977 800 CDD TOP1Ac 104 522 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 MobiDBLite consensus disorder prediction 762 800 - -
Lja6g0977 800 PRINTS Prokaryotic DNA topoisomerase I signature 261 270 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 PRINTS Prokaryotic DNA topoisomerase I signature 50 63 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 PRINTS Prokaryotic DNA topoisomerase I signature 436 450 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 PRINTS Prokaryotic DNA topoisomerase I signature 338 354 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 PRINTS Prokaryotic DNA topoisomerase I signature 143 161 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja6g0977 800 SUPERFAMILY Prokaryotic type I DNA topoisomerase 4 562 IPR023405 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0977 Lja-Chr6 21778573 21795761 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0977 K03165 - gmx:100791807 1508.04