Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0973 ATGTCCATCTTCTGTGCTACACTCGGCTCCTTTACTTCCATCTCCTTCGTCTCACCTTCACAATCCCAATCCGACCCTTCTTCTTCTTCTTCTTCTTCATCTTCGTCTTCTTTGTTCAGTTTTCGAAAATGTCCCCACAAGTTCACTGTAAAAACTCCATGGCTATGGCAGCATCCTCATCATCACCACCACCTCCACACCGCTAAAACCTCCGTCTCTGGCAATACCCAGATTGATCAAAACCCGGAAACTGGAATTCTTCGACGCCCTTCTGTTTCAGACCCACTGCAGGATGACCCTCGTCAAGCTCGGAAATTGTCGGATTGGAAGGCGGCAAAGGCATATAAAGAAAGTGGACTTGTTTATAGTGGCAGGGTTGAAGGTTTTAATGGTGGAGGCCTGCTGGTTCGCTTTTATTCTATATTGGGGTTTCTCCCATACCCACAATTGAGCCCAATGCACTCATGTAAAGAACCAGAAAAAACTATCCAAGAAATAGCAAAAGGCTTAGTTGGTTCAGTCATGCCAGTGAAGGTAATTCTAGCAGATGACGATAAGACAAAATTGATCTTCTCTGAAAAGGAAGCTGCCTACTCAAAATTTTCAAAACAGGTCAAGGTCGGGGACATTTTTGAAGCAAAAGTTGGTTCTGTTGAGGACTATGGTGCTTTTGTTCATTTGCGCTTCCCCGACGGTCTTTATCACCTAACTGGACTAATACACATCTCAGAAGTGTCATGGGATCTAGTTCAAGATGTAAGAGACTTCTTAACAGATGGTGATGAAGTGAGGGTCAAAGTTATCAATATTGATAGTGGAAAGTCTAGGATTACTCTGTCAATGAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTATAGCTGACTCTGATTCTATGAGTGATAGTGGTAGCAGTGGCATTGAGCCCCTTCCAGGGCTTGAATCAATCCTTGAAGAGCTTTTACAGGAAGATGGTATATATGATGCAAGAATCAGCCGTCAAGGGTTTGAAAAACGAGTGGTCTCGCAAGACTTGCAACTTTGGCTTTCTAATGCACCTCCTACGAATCAAAGGTTTACCCTCCTTGCTCGGGCTGGTAGACAGGTGCAGGAGATACATCTAACTACATCCCTTGATCAAGAAGGTATCAAAAAGGCATTACAACGAGTATTGGAGCGGGTCCCCTGA 1215 0.4395 MSIFCATLGSFTSISFVSPSQSQSDPSSSSSSSSSSSLFSFRKCPHKFTVKTPWLWQHPHHHHHLHTAKTSVSGNTQIDQNPETGILRRPSVSDPLQDDPRQARKLSDWKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFLPYPQLSPMHSCKEPEKTIQEIAKGLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQVKVGDIFEAKVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSRITLSMKQLEEDPLLETLDKVIPQDGIADSDSMSDSGSSGIEPLPGLESILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLERVP* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0973 404 MobiDBLite consensus disorder prediction 69 87 - -
Lja6g0973 404 MobiDBLite consensus disorder prediction 65 104 - -
Lja6g0973 404 Gene3D - 202 284 IPR012340 -
Lja6g0973 404 ProSiteProfiles S1 domain profile. 208 282 IPR003029 GO:0003676
Lja6g0973 404 MobiDBLite consensus disorder prediction 17 37 - -
Lja6g0973 404 ProSiteProfiles S1 domain profile. 119 194 IPR003029 GO:0003676
Lja6g0973 404 SUPERFAMILY Nucleic acid-binding proteins 118 194 IPR012340 -
Lja6g0973 404 Pfam S1 RNA binding domain 205 282 IPR003029 GO:0003676
Lja6g0973 404 SUPERFAMILY Nucleic acid-binding proteins 206 295 IPR012340 -
Lja6g0973 404 SMART S1_6 117 194 IPR022967 -
Lja6g0973 404 SMART S1_6 206 282 IPR022967 -
Lja6g0973 404 Gene3D - 109 201 IPR012340 -
Lja6g0973 404 PANTHER OS03G0844900 PROTEIN 11 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0973 Lja-Chr6 21650921 21658133 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0973 - - ahf:112740919 562.762