Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja6g0964 | ATGCAAACTAAGAAAGCCTCCAGGCGAAATGCTAGTAAAGAGTGCGGCAGTGTTAGGGTTTCAAGAGCACAGAAGAATCTCTCTGAAAATGGTCAAGTGGTTGAAAAGAAAGTCGCTAACTTAATCACATCATCTGCTCGAAAGAATAAATCTTCTTCAGTTAGAAAACTTGAGAATAAAGCTGGAAAGCCAACACCCTCAGCAGACTTGAATAATGGGCATGACTTTATGGACAATGGCACTTCCAATGCTTATTTGGAAAATGATGCAGCTGAGGGTGCTTCTGTAGATTTTTCGGGTTGTACCAAGCAAGCTGTACCGCTGGAATCTGGAACTATATTTTCTCCTGGGTTTCACTTATCCAAAGGTTCTGGAGGAAAAGTTGACAGAGTTGATTTTATCAAAATTTTTCAGAACGAGGATCAAAAAAGCATTTCTCCAGACCATGAGATAGAGTTACCACAGGAAGATACTATTGATGGTCATGTTAGTCATTATTCTGACTCTGCAATGGATATAGACATAGTCAATTCATCAAACTACTCCAATACACAGAAATGTGGTGATCATATGCTTGCTCTAAGCACACAAAATGTGAATGGTTGTGATTCTGATTTTGATGGAAATAGTATTTCCATGGAAGTTTCTGCCGTATATCTTTCCATGAAAAACTCAAAGCTGGAATGTGTTGATGAGCATGGTCAGGATTCCATGACTTCTGATATCCCAGAGGATGATGAATTTGAGGAATTTGAGGACTTTGACCCTTACTTATTCATAAAGACCTTACCAGAGTTGTCAACAGTAGTTCCAACTTTTAGACGTTTGTTGCTACCTAAGCAGACAAGGAGTTGCCCTCCGATTACTCTTGTCCTGGACTTGGATGAAACTTTGGTGCATTCTACACTAGAGTCTTGTGAGGATGTGGACTTCACTTTTCCTGTTAATTTTAACTCTGAGGAGCACATTGTCTATGTACGCTGCCGTCCTTACCTGAAAGATTTCCTTGAGAGAGTTTCTGGTCTTTTTGAGATTATCATATTTACAGCCAGTCAAAGTATTTATGCTGAACAACTTCTAAATATTCTTGATCCAAAGCGGAAGATATTTCGCCACCGTGTATATCGGGAATCCTGTGTTTATGTTGAGGGGAATTACCTCAAAGATTTAACAGTTCTTGGTCGTGATTTGGCTCGTGTTATGATAATTGACAACTCACCACAGGCATTTGGGTTCCAGGTGGATAACGGTATACCGATTGAGAGTTGGTTTGATGATCGTTCAGATCAAGAATTGGTTCTGTTACTTCCATTCTTGGAGAGCTTAGTTGGAGTTGATGATGTCCGGCCTCTAATTGCAAAGAAGTTCAACCTCAGGGAGAAAATTGCTGCAGCTGTGCATCCTCTAAATGCAAATGGAAGGCATTTCTTATCAGAATGA | 1440 | 0.3993 | MQTKKASRRNASKECGSVRVSRAQKNLSENGQVVEKKVANLITSSARKNKSSSVRKLENKAGKPTPSADLNNGHDFMDNGTSNAYLENDAAEGASVDFSGCTKQAVPLESGTIFSPGFHLSKGSGGKVDRVDFIKIFQNEDQKSISPDHEIELPQEDTIDGHVSHYSDSAMDIDIVNSSNYSNTQKCGDHMLALSTQNVNGCDSDFDGNSISMEVSAVYLSMKNSKLECVDEHGQDSMTSDIPEDDEFEEFEDFDPYLFIKTLPELSTVVPTFRRLLLPKQTRSCPPITLVLDLDETLVHSTLESCEDVDFTFPVNFNSEEHIVYVRCRPYLKDFLERVSGLFEIIIFTASQSIYAEQLLNILDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLARVMIIDNSPQAFGFQVDNGIPIESWFDDRSDQELVLLLPFLESLVGVDDVRPLIAKKFNLREKIAAAVHPLNANGRHFLSE* | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja6g0964 | 479 | CDD | HAD_FCP1-like | 287 | 420 | - | - | |
| Lja6g0964 | 479 | PANTHER | INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED | 3 | 466 | - | - | |
| Lja6g0964 | 479 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
| Lja6g0964 | 479 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Lja6g0964 | 479 | ProSiteProfiles | FCP1 homology domain profile. | 283 | 442 | IPR004274 | - | |
| Lja6g0964 | 479 | TIGRFAM | HIF-SF_euk: dullard-like phosphatase domain | 289 | 451 | IPR011948 | GO:0016791 | |
| Lja6g0964 | 479 | Pfam | NLI interacting factor-like phosphatase | 289 | 449 | IPR004274 | - | |
| Lja6g0964 | 479 | SUPERFAMILY | HAD-like | 276 | 453 | IPR036412 | - | |
| Lja6g0964 | 479 | MobiDBLite | consensus disorder prediction | 44 | 83 | - | - | |
| Lja6g0964 | 479 | PANTHER | NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED | 3 | 466 | - | - | |
| Lja6g0964 | 479 | Gene3D | - | 273 | 457 | IPR023214 | - | |
| Lja6g0964 | 479 | SMART | forpap2 | 286 | 430 | IPR004274 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja6g0964 | Lja-Chr6 | 21461888 | 21466246 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja6g0964 | K17616 | K12778 | gmx:100804307 | 753.436 |