Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0962 ATGCGTTCTCATAATCTCATCGATTTGAAAGCAGAAATAGGGACCGGAATCAACAAAACAAGGTTGAGAAATTTAATGTGTGATGATGAAGGAGGTGAAGATGTTGCGGATGAAGACCGTCCGGGAAAAAGGGCGGGTACACTAAAAGAGCAGCTAGATTCAATGACTCCAGCACTCCAAGAGATGCGCTTGAGGAAAGAAGAGAGGTTAAACCAATTCAGAGCTGTGCAAATGAGAATGATCTTTCGCGAGTATCAGAATGGGTTGCAAAGGCTCCACGATGAGAAGAATGAAAGACTCCAGAAAGTGGAGAAATATATATACAAAATGCACAGGTTGTCTACAACATTGGGAACAGATTCCTCTGCGATTATCACTCAAGTTCACCCAATCTTGAATGATTTGTGTGGAATAACAAAAAATATAAGTGACTCTAGCCAGGATAAACTCCATGTCGCGGTGGAGTCCCTTTATGAAGAAAAGCAAAATCAACTGAACAAAGTGAAACATTACTATTATTGTAGCAAATGGAAATCTGTTTCCCATGTAATAAAGTTTTTCTCAGTTTCCTCCGCAGAAGTATCAGACCCAGGAAGTCTTGCTCTAGAAATAGTCCAGCAGACTGAATCCGAAGTAAAGAGGCTGGATCAACTAAAAGCAAGCAAGATGAAGGAGCTATTCCAAAAGAAGAAACAGGAACTGGAGGAGGGGGGCGGGGGGGTTGACCATTGCAATCTAATCATGAGCATGGAGGAACAAATATCAAGAGCAAATGAAGAGGCTTCGAGCATGAAGGCAATAATGGAGAAAGTGGAAAAGTGGATGTTAGCACAAGATGAGGAGCAATGGCTAGAAGAATATGGCAGGGATAATAACCAATACTCAGTCATTAGAGGAGTACACAAAAATTTGAGACGAGCTGAACGATTCATCAAAACAATGAACTTCGCACTAACTGGCAGCAAAAACACATGTGCTTACATACAATGGTTTCTATTTCCAGCTTTGGTAGATTTGCTAATAAAATTGACTAGCAGTTGGGAAGAAGAAATTAATAAGGTTTTCTTTTATGATCAGGTACCTCTTAAGGAAATATTGGAAGAATATAATGTACTGAGGCGAGAAAAGGAGTAA 1134 0.4012 MRSHNLIDLKAEIGTGINKTRLRNLMCDDEGGEDVADEDRPGKRAGTLKEQLDSMTPALQEMRLRKEERLNQFRAVQMRMIFREYQNGLQRLHDEKNERLQKVEKYIYKMHRLSTTLGTDSSAIITQVHPILNDLCGITKNISDSSQDKLHVAVESLYEEKQNQLNKVKHYYYCSKWKSVSHVIKFFSVSSAEVSDPGSLALEIVQQTESEVKRLDQLKASKMKELFQKKKQELEEGGGGVDHCNLIMSMEEQISRANEEASSMKAIMEKVEKWMLAQDEEQWLEEYGRDNNQYSVIRGVHKNLRRAERFIKTMNFALTGSKNTCAYIQWFLFPALVDLLIKLTSSWEEEINKVFFYDQVPLKEILEEYNVLRREKE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0962 377 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 8 39 79 - -
Lja6g0962 377 Pfam Microtubule associated protein (MAP65/ASE1 family) 83 236 - -
Lja6g0962 377 Pfam Microtubule associated protein (MAP65/ASE1 family) 246 377 - -
Lja6g0962 377 Gene3D - 254 377 - -
Lja6g0962 377 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 83 236 IPR007145 GO:0000226|GO:0008017
Lja6g0962 377 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 239 377 IPR007145 GO:0000226|GO:0008017
Lja6g0962 377 Coils Coil 247 267 - -
Lja6g0962 377 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 8 83 236 - -
Lja6g0962 377 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 8 239 377 - -
Lja6g0962 377 Coils Coil 205 225 - -
Lja6g0962 377 Coils Coil 362 377 - -
Lja6g0962 377 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 39 79 IPR007145 GO:0000226|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0962 Lja-Chr6 21441206 21445876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0962 39 370 EF-hand Containing Proteins AT5G62250 28.894 8.40e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0962 K16732 - gmx:100791080 392.504