Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0951 ATGGCATCTGACAAGAAGATTAAGATCGGTATCAATGGATTTGGAAGGATTGGACGATTGGTTGCCAGGGTTGCTCTTCAGAGAAACGATGTTGAGCTCGTTGCTATCAACGATCCTTTCATTACCACTGATTACATGTCTTACATGTTCAAGTACGACACCGTTCATGGGCAGTGGAAGCACTTTGATGTCAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGACAAGGCTGTTACTGTTTTTGGAACCAGGAACCCTGAGGAGATCCCATGGGGTGAGGTTGGTGCTGATTTTGTTGTTGAGTCAACTGGTGTGTTCACTGACAAGGATAAAGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTAATTTCAGCCCCAAGCAAGGATGCACCCATGTTTGTTGTCGGAGTTAACGAGAAGGAGTACAAGCCAGAGCTTGACATTGTTTCCAATGCCAGCTGCACTACTAATTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACCGATTCGGAATTGTAGAGGGTCTTATGACCACTGTTCACGCCATCACAGCTACTCAGAAGACTGTTGATGGTCCATCAAGCAAGGACTGGAGGGGTGGGAGAGCTGCCTCTTTCAACATCATTCCAAGCAGTACTGGAGCTGCTAAGGCTGTGGGGAAAGTTCTTCCTTCCCTGAATGGTAAATTGACTGGAATGTCTTTCCGGGTTCCAACTGTTGATGTTTCAGTCGTTGACCTCACTGTCCGGCTAGAGAAGGCTGCATCCTATGAGCAGATCAAAGCTGCCATCATGGAGGAATCCGAGGGCAAATTGAAGGGGATTTTGGGTTATATTGAAGAAGATGTGGTGTCTACTGACTTTGTTGGTGATAGCAGGTCAAGCATTTTCGATGCTAAGGCTGGAATTTCTTTGAATGACAACTTTGTAAAACTTGTTTCGTGGTATGACAACGAATGGGGTTACAGTACCCGTGTGGTTGATTTGATTGTCCATATCGCATCTGTGGCTTGA 1023 0.4624 MASDKKIKIGINGFGRIGRLVARVALQRNDVELVAINDPFITTDYMSYMFKYDTVHGQWKHFDVKVKDSKTLLFGDKAVTVFGTRNPEEIPWGEVGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAASYEQIKAAIMEESEGKLKGILGYIEEDVVSTDFVGDSRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIVHIASVA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0951 340 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 8 331 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lja6g0951 340 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 337 IPR020831 GO:0016620
Lja6g0951 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 173 IPR036291 -
Lja6g0951 340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 110 IPR020828 GO:0051287
Lja6g0951 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 IPR020831 GO:0016620
Lja6g0951 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 IPR020831 GO:0016620
Lja6g0951 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Lja6g0951 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 252 IPR020831 GO:0016620
Lja6g0951 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 275 290 IPR020831 GO:0016620
Lja6g0951 340 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 IPR020830 GO:0016620
Lja6g0951 340 Gene3D Dihydrodipicolinate Reductase; domain 2 156 321 - -
Lja6g0951 340 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 337 - -
Lja6g0951 340 Gene3D - 7 334 - -
Lja6g0951 340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 319 IPR020829 GO:0016620
Lja6g0951 340 PIRSF GAPDH 5 340 IPR020831 GO:0016620
Lja6g0951 340 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156 319 - -
Lja6g0951 340 SMART gp_dh_n_7 7 157 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0951 Lja-Chr6 21216917 21220103 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0951 K00134 - gmx:100782924 634.795