Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0940 ATGACGGAAAGTGAAGGAAAGTGTAAGAAAAAAATGGAGCAACAGAAGAAAGGTCGAGGAATGCTCGTCTTCACCGGAACTGCGGCGGTGGTCGCAGTCGCTGCGAACATCGCTTTCGCTGCTATCAAGCGCCATTTGGATAACAATGCAAAGAAGCAGAAAGATCTTGCAGGTTCTGATGTGCGTGTTAATCTATCTCCATCTGAGATTCTTAATTTGGCAGACCAAATCATCGCCAAGTCAATCAAGGTCCATAATTCTGTTGCATCGATACCTCTCAATAAGGTTACATATGCAAATGTAATATCACCTCTGGCAGAACTGCAAGCGGAGCAGTTCCCACGTATCCATTCTTGTGTGTTTCCAAAGATGGTATCTCCTAGGGAGGATGTGCGCGAAGCAAGTACTGAAGCAGAGCAAAGAATAGATGCTCATCTTCACATGTGCAGCAAACGTGAAGATGTCTATCTTGTTGTTAAAGCATTTGCAGCTAGAGGTGATTGGATGAATGCTGAAACCAAACGCTTTGTTCAAATTCTGGTGAGAGACTTTGAGCGAAATGGATTGAACCTCACTGCAAGCAAACGAGAAGAGTTGCAGCGTCTGAGGGCTCTGATTGATGAGCTAAGCCTTAGATATATTGAAAATCTCAATGATCATAGCGCGTTTCTTCTATTCAATGAGGCGGAGTTATGCGGATTACCTCCAGAGTTTCTCAAGGGTTTAGATAAATCAGAAAATGGACAATTGAAGATCTCCCTGAAAAGTCATCATGTCACAGCTGTACTTGAATTTTGCAAGGCAGGAACTACAAGACGGATGGTATTGGGAGCATACGGTAATCGATGTGGAGAAGTCAATCGTTCTATTTTAGAAAGCCTGGTGCAACAGCGCCATAAATATGCTCGTTTACTTGGCTATTCATGCTATGCAGAGTATGCTGTTGATGTTAGAATGACAAAGACACCTTCAAAGGTGTTTGAGTTTCTGAAAAGCATGTCAACAAGTTTAACTGAGTTGGCTATGAAAGAACTCGATATATTGAAAGATTTGAAGAGGAAAGAAGAAGGGGAGTTACCATTTGGAACTGAAGACCTACTGTATTATGTAAAACGGGCTGAAGAGCAGAATTATGATTTGGACTTTGGCGAGATCAAGCAATATTTGCCAATTAGTTTAGTTCTATCTGGAATCTTTAAAATTGTCCAAGATCTTTTTGGTTTAAGGTTTGAAGAAATTGCAGGAGCTGATGTTTGGCATTGTGATGTTCGTGTTTTTTCAGTACTTGACTTAGGTTCTAATGAACTCTTAGGTTATTGCTACCTTGATTTGTTCTCAAGGGAAGGAAAATATGGCCATACTTGTGTGGTGGCTCTCCAGAACAGTGCATTAAGAATCAGCGGGTCACGACAGATACCAATTGCGTTACTAATATCCCAGTGTCAAAAGGGTGCTGACAGTAGCCCTGGATTATTGCGGTTTTCTGAGGTGGTTGGTCTTTTCCACGAGTTTGGCCATGTGGTTCAACAAATTTGCAACCGTGCTTCATTTGCTAGAATTTCTGGATTACTTGTTGATCCTGACTTTGTGGAGATACCTGCTAAACTGCTCGAAAACTGGTGTTTCGAAAGCTTTTCTCTGAAGTTGATTTCTGGATTTCATCAGGATATCACAAAGCCTATAAATGATGACTTATGCAAATCAATTAAAAGATGGAGGACTTCCTTGTCTGCAATTAAATTGAAGCAAGAGATTCTATACTGTCTTTTCGACCAAATCATACATTCGGCGGATAACATTGACATTCAAGAGTTATTCAAGAATCTTCATCCTGAGGTGATGTTAGGATTGCCGGCATTAGAAGGAACCAATCCAGCTTCATGTATTCCTCAAAGTGTTATTGGTTGCGAAGCAGCTTGCTACAGTAGTATGTGGAGTGAGGTTTTTGCTGCTGATATTTTCGCCTCAAAGTTTTGCAATGATGATTCAAACCAGCACGTAGGCATGCAATTCAGGAACAAGGTATTGGCCCCAGGCCGATCGAAGGATTCTATTGAAGTGCTATCGGACTTTCTAGGAAGAGAACCATCAATTCAGGCTTACGTTGAGAGCAAAACCAATAATATTTTGTAA 2133 0.4112 MTESEGKCKKKMEQQKKGRGMLVFTGTAAVVAVAANIAFAAIKRHLDNNAKKQKDLAGSDVRVNLSPSEILNLADQIIAKSIKVHNSVASIPLNKVTYANVISPLAELQAEQFPRIHSCVFPKMVSPREDVREASTEAEQRIDAHLHMCSKREDVYLVVKAFAARGDWMNAETKRFVQILVRDFERNGLNLTASKREELQRLRALIDELSLRYIENLNDHSAFLLFNEAELCGLPPEFLKGLDKSENGQLKISLKSHHVTAVLEFCKAGTTRRMVLGAYGNRCGEVNRSILESLVQQRHKYARLLGYSCYAEYAVDVRMTKTPSKVFEFLKSMSTSLTELAMKELDILKDLKRKEEGELPFGTEDLLYYVKRAEEQNYDLDFGEIKQYLPISLVLSGIFKIVQDLFGLRFEEIAGADVWHCDVRVFSVLDLGSNELLGYCYLDLFSREGKYGHTCVVALQNSALRISGSRQIPIALLISQCQKGADSSPGLLRFSEVVGLFHEFGHVVQQICNRASFARISGLLVDPDFVEIPAKLLENWCFESFSLKLISGFHQDITKPINDDLCKSIKRWRTSLSAIKLKQEILYCLFDQIIHSADNIDIQELFKNLHPEVMLGLPALEGTNPASCIPQSVIGCEAACYSSMWSEVFAADIFASKFCNDDSNQHVGMQFRNKVLAPGRSKDSIEVLSDFLGREPSIQAYVESKTNNIL* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0940 710 Coils Coil 192 212 - -
Lja6g0940 710 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 63 703 - -
Lja6g0940 710 Gene3D Endopeptidase. Chain P; domain 1 41 186 IPR024080 -
Lja6g0940 710 PANTHER SACCHAROLYSIN 50 708 - -
Lja6g0940 710 Gene3D Collagenase (Catalytic Domain) 390 540 IPR024079 GO:0008237
Lja6g0940 710 Pfam Peptidase family M3 266 704 IPR001567 GO:0004222|GO:0006508
Lja6g0940 710 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 50 708 IPR045090 GO:0004222|GO:0006508
Lja6g0940 710 CDD M3A_TOP 73 705 - -
Lja6g0940 710 Gene3D Neurolysin, domain 3 196 702 IPR024077 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0940 Lja-Chr6 20845644 20868942 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0940 K01392 - gmx:100793518 1118.61