Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0927 ATGGCTATGATGGCATACCAACTTTCTCGGTTACCTTACCAAGATTCCCTCAAATTACTCGAAGCTGATATACAACACGCCAATGCTTTGGCTGCTGCAATTCCCACAACAAAGGGTGGGTCTCTTCTTCAGATGAAATTGGTTTGCAATCAATTGGCTCCTCTTTTTCTATTGTTTCTGCAATGGATAGATTGTTCTTGTTCAGGGTTTCTGCATAGGTATCTTGACCTCTTCCACATAGTTATATACAAGGTAAACAGTGATGGTCGATCAATAATGTCCACTCATAGAAGAAAGGCAACCATTGGGGACTTTTATGCCGTTATATTGCCATCTCTCCAGCGGCTTCTTGGTAGCTTTGATAAGTCTGAGCTTTCTGATCAAGGGCCATCAAGCATAGAAGGTTCAAGATATGGCAAAAAGGTGATTGAAGGAGATGAGAAACTAACCAATGTTGATTTGCAAAGGGAAGATGAATGTGGGATTTGCTTAGAGCCTTGCACCAAAATTGTGCTGCCTTATTGCTGTCATGCCATGTGTATAAAATGCTACTGCAAGTGGAACAGAAAGTCAGAGTCTTGCCCTTTTTGCCGCAGTAGCTTGAGGAGGGTTAAGTCGGAGGATCTATGGGTACTAACTTGTAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAGGGAGGACCTGTTGCATTTTTACCTCTATATCAACAAGCTTCCTAAAGACCACCCAGATGCTCTTTTTCTAATGTATTATGAGTACCTGATTTAA 771 0.4125 MAMMAYQLSRLPYQDSLKLLEADIQHANALAAAIPTTKGGSLLQMKLVCNQLAPLFLLFLQWIDCSCSGFLHRYLDLFHIVIYKVNSDGRSIMSTHRRKATIGDFYAVILPSLQRLLGSFDKSELSDQGPSSIEGSRYGKKVIEGDEKLTNVDLQREDECGICLEPCTKIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLRRVKSEDLWVLTCNEDVVDAETVSREDLLHFYLYINKLPKDHPDALFLMYYEYLI* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0927 256 Pfam Ring finger domain 158 198 IPR001841 -
Lja6g0927 256 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 256 - -
Lja6g0927 256 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Lja6g0927 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 209 IPR013083 -
Lja6g0927 256 PANTHER RING FINGER PROTEIN 41, 151 6 256 - -
Lja6g0927 256 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Lja6g0927 256 SUPERFAMILY RING/U-box 151 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0927 Lja-Chr6 20410508 20412966 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0927 - - gmx:100812518 442.195