Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0912 ATGAATCCACTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACAGGCCGAACCCTGTGGTGACGAAATCGCCTGGTCAGTGTCAGTTAGGGCTAGATTCAACAGTCAGGACGACGGTGAACTGCGCTTTCAGATCGGTCTCCTCCGCTCAGGACTCGTCGCTCGCTGGCGGCGACTCCGTCAAATCATCAACCGCCCACGACGACAACGACGAGGAGCCTCGGGATTCCAAGGTGTTTGCTGGTGGTGGAGGTAGTGTGGCGGGGATACTGTACAAGTGGGTGAACTACGGCAAGGGGTGGAGGTCACGGTGGTTTGTGCTTGAAGATGGTGTGCTTTCGTATTACAAGATTCATGGGCCGGACAAGATCTTGATGAGCCCTGCTAAGGATAGGGGTGTGAGGGTGATCGGTGAGGAGTCGTCGAAGTTCGTGAAGAAGGCGAATTGGAACCTCAATCGGGGAGTCTCTGGAGTTGGAGGAGGAGGATCCACCAAGCAATGCAAGCCCTTTGGTGAGATACATTTGAAGGTTTCTTCAGTTCGTTCCAGCAAGTCAGATGACAAGCGACTTTCTATATTTACTGGGACAAAAACCCTTCACTTGCGTTGCGTTTCTAGAGAAGACAGAGCCATGTGGATTGAGGCCTTGCAGTGTGCTAAAGATCTTTTTCCTAGAGCTCTAACTAGTGGCGATCTTGCAACTTCAGAAGATATTGTAGTTTCGACAGAGAAGCTCCGTTCGCGATTATCACAGGAAGGCATTAATGAAGCAATCATTAGTGACTGTGAGTCTATTATGCTCTCTGAAGTCTCTTATCTTCAAGGCAAGTTTAAGTTTCTTCAGCAGAAACATTTTATGTTGCTGGACACCTTAAAACAACTGGAGACGGAGAAGATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAGTCATATTGTGGACAAGTGAATAGAAGGTTTAGTGATTTTTATTCTGTGTTGTCGGAGGGCAGTGCTACTGATTCTGTAGCAGATAATGAAAGTCAAGATGGAGCGGATGCTGAAACAGATGATGATGATGGAGCATATTTTGACACAAACGAGATTTTGTATTCGGATGCCTTGAGAAGTGCTTCCTATCGAAGTCGGGAAGGTATAGGAAATGGCAGCATATATGATAGAGATTATATTCTTTATGATGGTTTGCATGGGTTTGAGAAAGAGATCAAAGATATAAGTTATCCTTTTGTTAAAAGAAGGGACAACTTGCCAGAGCCAAAAGAGAAAGAGAAGCCTATGGGCTTGTGGTCAATTATTAAAGACAATATCGGAAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCGCTCTCTTCATTGCAAAAGTGTTTCGAAGACCTAGAGTATTCAAACCTGGTTGATAGAGCATTGGAGTGGGGAAAGCAGGGGAATGATTTGATGCGAATACTAAATGTTGCAGCTTTTGCTGTGTCTAGCTATGCGTCAACTGAAGGCAGGCAGTGTAAACCTTTCAATCCTTTACTTGGGGAGACTTATGAAGCCGACTATCCAGATAAAGGACTTAGGTTTTTTTCTGAGAAGGTCAGTCATCATCCAATGATAGTTGCTTGTCACTGTGAGGGAGGTGGATGGAAGTTCTGGGCAGACTCTAATTTGAAAGGAAAATTCTGGGGCCGTTCTATTCAGTTAGACCCTGTAGGTGTCCTCACCCTACAGTTCGAGGATGGTGAAACATTTCAGTGGAGCAAGGTCACCACTTCCATATACAATATCATACTAGGTAAAATATATTGTGACCACTATGGTACCATGCACATCAAAGGCAGTGGCAACTACTCTTGCAAACTGAAGTTCAAAGAGCAATCTATCATAGACCGGAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACCGGAGAGAAGGTAGCAATGTTGATTGGGAAGTGGGATGAAGCGATGTATTATGTACTTGGGGATCCAACTACAAAGCCAAAAGGTTATGATCCAATGACAGAAGCTGCATTATTGTGGGAAAGGGACAACTATGTTTCCAAAACAAGATATAACCTCTCTCCTTTTGCGATTTCGCTGAATGAAATAACGCCTGGTTTATCAGAGAAGTTGCCTCCAACTGACTCAAGGTTGAGACCAGACCAAAGACATTTAGAAAATGGAGAGTATGAATTGGCAAATGCAGAGAAACTGAGACTTGAACAGCTGCAGAGACAGGCAAGAAAGATGCAAGAAAGAGGATGGCAGCCCAGATGGTTTAAAAAGGACGAGGATGGTTGTTACCGATATATGGGTGGCTATTGGGAAGAAAGAGAAAAGAGTAATTGGGATGGAATCCCTGATATCTTTGGACAGAGTTGTGATTTGCCTTCGTGTTCTGAAGAGACTGTATTTTATTGA 2439 0.4436 MNPLCCIAPVSIDRDRPNPVVTKSPGQCQLGLDSTVRTTVNCAFRSVSSAQDSSLAGGDSVKSSTAHDDNDEEPRDSKVFAGGGGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPAKDRGVRVIGEESSKFVKKANWNLNRGVSGVGGGGSTKQCKPFGEIHLKVSSVRSSKSDDKRLSIFTGTKTLHLRCVSREDRAMWIEALQCAKDLFPRALTSGDLATSEDIVVSTEKLRSRLSQEGINEAIISDCESIMLSEVSYLQGKFKFLQQKHFMLLDTLKQLETEKIELETTVVDETKERESYCGQVNRRFSDFYSVLSEGSATDSVADNESQDGADAETDDDDGAYFDTNEILYSDALRSASYRSREGIGNGSIYDRDYILYDGLHGFEKEIKDISYPFVKRRDNLPEPKEKEKPMGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSNLVDRALEWGKQGNDLMRILNVAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGGGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWERDNYVSKTRYNLSPFAISLNEITPGLSEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWQPRWFKKDEDGCYRYMGGYWEEREKSNWDGIPDIFGQSCDLPSCSEETVFY* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0912 812 Gene3D - 517 683 - -
Lja6g0912 812 SUPERFAMILY PH domain-like 84 222 - -
Lja6g0912 812 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 801 IPR000648 GO:0008289
Lja6g0912 812 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 801 - -
Lja6g0912 812 MobiDBLite consensus disorder prediction 52 81 - -
Lja6g0912 812 SMART PH_update 85 224 IPR001849 -
Lja6g0912 812 Pfam Pleckstrin homology domain 89 218 - -
Lja6g0912 812 MobiDBLite consensus disorder prediction 64 78 - -
Lja6g0912 812 Gene3D - 85 224 IPR011993 -
Lja6g0912 812 ProSiteProfiles PH domain profile. 84 222 IPR001849 -
Lja6g0912 812 Coils Coil 739 759 - -
Lja6g0912 812 SUPERFAMILY Oxysterol-binding protein-like 427 798 IPR037239 -
Lja6g0912 812 MobiDBLite consensus disorder prediction 336 357 - -
Lja6g0912 812 Coils Coil 292 312 - -
Lja6g0912 812 Pfam Oxysterol-binding protein 432 785 IPR000648 GO:0008289
Lja6g0912 812 Gene3D - 728 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0912 Lja-Chr6 20086722 20099542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0912 K20456 - gmx:100817856 1477.61