Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0758 ATGGCGAAGAAAGTCAGAAAGAAGACCCGAGGTTCTGGTAAGGAGAATGGGGTTGCTACCCCTTCGCCAAAAAAAGTTGTGGAAGTGTCCAAGCCTGTTGAGTCTGTTGATGAGGTGGTTTCGGTTCCAAAAGAGACGATTTCTTGCCCTCATCTTGTAAAAGGTGTTAATTTAACTAGATTGACTGAGAAGATTGGGTCTTCTGGATCCATAAGGTGTGAAGATTGTAGGGAAAGCGCGGCTGATAGGAGGGGCGGTAAAGGAAAAGGCAAACATGGGAAAAAGAAAGGTAGTGCGTCAGTAGATTCGAAATCCGAGTCAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAATATACATGTGGAGGTTTGGGGCTACCAGTAATCCCAAAATGCCATGTGGTTGGGCATTCGAGGAAAAATAGGCACCCCTTAGTGGTTCATTCTGATAAACCTCAACTCTGTTGGTGTTTTCCGTGCGATATGCTTATTCAGGTTGATAAAATTGATAAAACGGATGAAACAAGTAATCTTCTATCTGATGTTGTAAAATTGTTGAAAGGGCGATCATCTGAAAAATCATCAGTGGATGTTGAGGATGCTTCCTTTAAGGACGACAGTCTTACTTCAGAAATTAAGTCAGGAATTCTTGTCACAAGCGATTCACAAGGACAAGGTGGTTATGTAGTTAGAGGTATGGCTAATCTTGGGAACACCTGCTTTTTCAATTCAGTCATGCAAAATCTGCTTGCTATGAATAGATTGCGTGACATCTATATAAAGTTAGATGCTCCTGCTGGGCCACTGATTAGTTCTTTGAAGAAGCTGTTCACTGAAACAAACCCAGAATCAGGATTGAAGAACATTATAAATCCTAGATCCTTTTTTGGATGTGTATGTACTAAGTCTCCGCAATTCCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAACTAGCTGGAAGGAAACAGAATGGTTCTCTCAAGAGAGATGGGACCTCTTCCAGTACTTTAGTTGATGCTTTATTTGGGGGTCAGATATCCAGTACTGTATGTTGCATTGAATGTGGGCATTTCTCAACAGTGTATGAGCCTTTTTTAGATCTTTCCCTCCCTGTTCCAACTAGGAAACCTCCACCTCGGAAGGCTAAACCCGTAACTCAAACCAAAAAAGCAAAGCTTCCACCAAAAAAAGGCGGAAAAGCTCGAGTCAAAGTTCTCAAGGAAGCTGATCCCTTACCTGTTCAAAGTCCATCAAACACATCAACCAACCATCAACCATCCTGCCCTGATCAGTCCACTATATCAGCTGCAGGAGAAATGGTGGCTTCTTCTAGTGATTCTACAGCATTAGTTTCTGAAGAAATAAACAGTGGGGGTAATAAAGAGGACTTGTCTTTGCCTAATTCGGTTACTGTTGAAGAGCCTAAACAGATACAGGTGGTTGACAATGGGGCAAAGGAAATGTCAGCTTCATCAGATGATTTTGCATGGTTGGATTTTGTGGACGCTCAAACCGATGAACGTGCTTCCATTTCCCAGAATGAGGATGCACCAGAGGTACAGGATACTGAGAGCAAGGATGAATGTTCAAATGAATTTCCTAAACAGGCTAGCTGTGAAACTAGTGGTCCTGTTTATTCTGTTGATGAGGATCAAAATGTAAGACCAGATTCTTCTTCAGCAAATGGGTGGGAAGATGAGGCTCCATTACAAGTTCAAGGTTCAGAAGTGCTGTTACTTCCGTACAAAGAAGAAAGTTCCTCGGCTGGTGAGATCATTGGAAGAGATGGCGAGGCCTCATCAGCAGTTTTGGATGGTGGTCAAGAAGATTTGGAGTTTGATGCCTTTGGTGGGTTATTCAATGAACCTGAAGTTGTTGCTGGGCCTGCTCCTAGACCTTCTTCAAGTAGTGACATGGATGTTAGTTTCATCGGAAACAGTGAGTCTGATCCAGATGAAGTAGATGACGCTGATTCTCCAGTGTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAACTTCTCACAGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAATTCTCCAACGTCAAAAGTTGGAAGCAAGAACTGTATCCGATGGAAATGAGACTAGTAATCAGGATGAACCATGTCATGCATCTAACTCTTGTTCTGTTCAAGTCAGAAGCACTGGAAATGGTGATATTAAAAACGACAAGAACATAGAAAATTTGGACTCTCATGTTAAACATGGAGGAGAGGTTGAAAATGGTCAAACAGGTGAGCTGAGTTTAATTGTTAATGAAAAGGATCGCGTGGCATTTAAGGTGGAGAATGCTTGCAATGAAGAAAGGTTCAACCATTCAGCTGCTGATAACAATGACTCAAAAGAATGCAGCGAGAAAGAAACCAACTCCAAAAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGAGTCCTCATATATAAAGCACCACCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCCCGTGGACGCTTAAGTAAATTAAATGGTCATGTCATTTTCAGAGAAACAATAGATCTTAGATCATACATGGACCCCAGGTGCATCAATGAAGAGAAGTATGAATACCACTTGGTTGGTGTTGTGGAGCACTCAGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGGCAAAGGAACAAAGGAAATGCTGATAAGGAGAATGAGAGGTCCACATGGTATCACGCGAGTGATGCATATGTGCGTCAAGTTTCTCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTATGAAAAAAATTAA 2856 0.4205 MAKKVRKKTRGSGKENGVATPSPKKVVEVSKPVESVDEVVSVPKETISCPHLVKGVNLTRLTEKIGSSGSIRCEDCRESAADRRGGKGKGKHGKKKGSASVDSKSESKSIWVCLECGQYTCGGLGLPVIPKCHVVGHSRKNRHPLVVHSDKPQLCWCFPCDMLIQVDKIDKTDETSNLLSDVVKLLKGRSSEKSSVDVEDASFKDDSLTSEIKSGILVTSDSQGQGGYVVRGMANLGNTCFFNSVMQNLLAMNRLRDIYIKLDAPAGPLISSLKKLFTETNPESGLKNIINPRSFFGCVCTKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSLKRDGTSSSTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLPVPTRKPPPRKAKPVTQTKKAKLPPKKGGKARVKVLKEADPLPVQSPSNTSTNHQPSCPDQSTISAAGEMVASSSDSTALVSEEINSGGNKEDLSLPNSVTVEEPKQIQVVDNGAKEMSASSDDFAWLDFVDAQTDERASISQNEDAPEVQDTESKDECSNEFPKQASCETSGPVYSVDEDQNVRPDSSSANGWEDEAPLQVQGSEVLLLPYKEESSSAGEIIGRDGEASSAVLDGGQEDLEFDAFGGLFNEPEVVAGPAPRPSSSSDMDVSFIGNSESDPDEVDDADSPVSVESCLAHFIKPELLTDENAWHCENCSKILQRQKLEARTVSDGNETSNQDEPCHASNSCSVQVRSTGNGDIKNDKNIENLDSHVKHGGEVENGQTGELSLIVNEKDRVAFKVENACNEERFNHSAADNNDSKECSEKETNSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVIFRETIDLRSYMDPRCINEEKYEYHLVGVVEHSGTMRGGHYVAYVRGGQRNKGNADKENERSTWYHASDAYVRQVSLDEVLRCEAYILFYEKN* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0758 951 SUPERFAMILY RING/U-box 47 165 - -
Lja6g0758 951 Pfam Zn-finger in ubiquitin-hydrolases and other protein 73 166 IPR001607 GO:0008270
Lja6g0758 951 MobiDBLite consensus disorder prediction 640 671 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 713 746 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 81 101 - -
Lja6g0758 951 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 231 951 IPR028889 -
Lja6g0758 951 SMART Zf_UBP_1 101 154 IPR001607 GO:0008270
Lja6g0758 951 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 796 818 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 531 545 - -
Lja6g0758 951 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 882 899 IPR018200 GO:0004843|GO:0006511
Lja6g0758 951 Gene3D Cysteine proteinases 645 951 - -
Lja6g0758 951 Gene3D Cysteine proteinases 218 408 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 383 483 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 713 749 - -
Lja6g0758 951 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 950 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 425 483 - -
Lja6g0758 951 SUPERFAMILY Cysteine proteinases 230 950 IPR038765 -
Lja6g0758 951 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 184 IPR013083 -
Lja6g0758 951 MobiDBLite consensus disorder prediction 519 581 - -
Lja6g0758 951 MobiDBLite consensus disorder prediction 546 578 - -
Lja6g0758 951 Pfam Ubiquitin carboxyl-terminal hydrolase 232 948 IPR001394 GO:0004843|GO:0016579
Lja6g0758 951 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 232 247 IPR018200 GO:0004843|GO:0006511
Lja6g0758 951 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 950 - -
Lja6g0758 951 CDD Peptidase_C19K 823 949 - -
Lja6g0758 951 ProSiteProfiles Zinc finger UBP-type profile. 47 183 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0758 Lja-Chr6 16567718 16571966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0758 823 950 Miscellaneous Gene Families AT2G24640 36.641 7.54e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0758 K11844 - gmx:100780952 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0758 6 16567718 16571966 Lja6g0758 6 16567718 16571966 ECH