Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0756 ATGAGTTTATCATTTTCTCTGGCAGCAAAGCCTTCAATCTACAGGAGCAACAGGAAACCATGCTGTAGCAGAAATGATGTTATAAGGTCAGAGGTAACCTTGGCTCCCAAACAAAGAACCGAGAGCATGTTTCCTCTGCTGTCAAAACAAGGAGTTTCTCTAGCTGATTTACACGTACAAGAAGTTGTTGAGAGGCAGTGCCAGACATCAAATTTTGACACTTTAAGTCCTTGTAGCAAGCCAAAGTTTGAGCCCAATTTTCTCATGGATTCCTATGAAATGTGTAGAAAGATCTGTGCCGAATATGCCAAGACCTTCTATCTTGGAACATTGCTTATGACAGAAGAAAGGAAGAGAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAACTGGTTGATGGCCCTAACGCTGACTATATGAACTCTTCTGTGCTTGATAGGTGGGAAGATAGATTGCATGATATTTTCAATGGACAACCCTATGATATGCTTGATGCTGCACTTACTGATACAGTCTCCAACTTCCCCTTGGATATTAAGCCTTTCAGGGACATGATACAAGGTATGAGAATGGACACAATGAAAAGCAGATACAAGAATTTCGAGGAGTTATATCTCTACTGCTACTATGTAGCTGGAACTGTTGGATTGATGAGTGTTCCAATAATGGGAATTTCCCCAGAGTCTCTCATATCTGCTCAGAGTGTATATAAGGCAGCACTGCATCTTGGGATTGGAAATCAACTCACAAACATTCTTAGAGATGTTGGAGAGGATGCATTGAGAGGTAGAGTCTACCTTCCCCAAGATGAACTTGCCCAGTTTGGTTTGTGTGATGAGGATGTTTTCTCAAGAAAGGTCGATGAAAGATGGAAAGAGTTTATGAAAGAGCAGATTACAAGGGCAAGATTCTACTTCAATTCAGCAGAGGAAGGAGCTTCTCAGCTTCAAAAGGACAGCCGTTGGCCAGTTTGGTCCTCACTGATATTGTATCGCAAGATCTTGGATGCAATTGAAGACAATGATTATGACAATTTGACGAAAAGAGCCTATGTAGGACGAACTAAGAAACTTTTGACGTTGCCTTTAGCCTATACTAGATCTCTCTCCATTGCCACAAGGAAATTTCATCCTTCATTGGCAAGGAATAACTTGCAAAATTAG 1173 0.4126 MSLSFSLAAKPSIYRSNRKPCCSRNDVIRSEVTLAPKQRTESMFPLLSKQGVSLADLHVQEVVERQCQTSNFDTLSPCSKPKFEPNFLMDSYEMCRKICAEYAKTFYLGTLLMTEERKRAIWAIYVWCRRTDELVDGPNADYMNSSVLDRWEDRLHDIFNGQPYDMLDAALTDTVSNFPLDIKPFRDMIQGMRMDTMKSRYKNFEELYLYCYYVAGTVGLMSVPIMGISPESLISAQSVYKAALHLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDEDVFSRKVDERWKEFMKEQITRARFYFNSAEEGASQLQKDSRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKLLTLPLAYTRSLSIATRKFHPSLARNNLQN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0756 390 CDD Trans_IPPS_HH 93 360 IPR033904 GO:0004311
Lja6g0756 390 SUPERFAMILY Terpenoid synthases 90 373 IPR008949 -
Lja6g0756 390 SFLD Isoprenoid Synthase Type I 89 370 - -
Lja6g0756 390 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 3 377 - -
Lja6g0756 390 ProSitePatterns Squalene and phytoene synthases signature 2. 246 271 IPR019845 GO:0016765
Lja6g0756 390 Gene3D Farnesyl Diphosphate Synthase 86 366 IPR008949 -
Lja6g0756 390 SFLD Phytoene synthase like 89 370 IPR044843 GO:0004311
Lja6g0756 390 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 3 377 - -
Lja6g0756 390 ProSitePatterns Squalene and phytoene synthases signature 1. 210 225 IPR019845 GO:0016765
Lja6g0756 390 Pfam Squalene/phytoene synthase 102 357 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0756 Lja-Chr6 16511068 16514268 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0756 K02291 - gmx:100782394 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0756 6 16511068 16514268 Lja6g0756 6 16511068 16514268 ECH