Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0755 ATGTGCGCAGTTACTTGTTCAATCCTTGCTTCCTGGCCTTCTTTTTCTTCCTCTTCATTCCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAACCACCTTCACCATAACCACAAACCCGAGCTCTATTGCCTCAACAACCGTAGCAGCTACAGTCAAAGATGTCTGGACCCGAACAACACCATCGCCATATCACCGCCGTACCAGAACCCAACAGCAAATGTTCCTAGACCACAGCATCGACATGGATGAACTACTAGCCTCAATCAGCTCCACCCAGAACGAGCAAGAGCTTCACGCTGTGATGTCGCTCTACAACCAGAGACAGCTTTCCATTCGCTTCATGGTTTCCCTCCTCTCCCGCGAAACCGATTGGCAGCGCGCATTGGCTTTGCTCGATTGGATCAATGAAAAGGCTCTTTACTCGCCCTCGGTGTTCGCCTACAATGTTGTTCTTCGCAATGTGCTGCGAGCGAAGCAATGGCACCTTGCACACGGACTGTTTGATGAAATGCGCCAGAGAGGACTTGCCCCTGATAGGTACACTTACTCCACGCTCATTACCCATTTTGGGAAACATGGCTTGCTTGATTCCTCTTTGTTCTGGCTGCAGCAGATGGAGCAAGACAATGTGTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGCAAGCTGGGTGATTATTCCAAGGCGATTTCCATTTTTGCCAGGTTGAAAGCGTCGTCTATTGCCCCTGACCTCATTGCTTATAACTCTATGATTAATGTGTTTGGAAAGGCTAAGCTCTTCCGTGAGGCTCGTCTTCTTCTACAAGAGATGAGGGACAACGGTGTTTGCCCTGACACAGTTAGCTACTCTACGCTTCTTGCCATTTATGTAGACAATGAGAGGTTTGTTGAGGCGCTTTCTGTTTTCTCTGAAATGAATGATGCCAAATGCCCGCTTGATCTCACCACTTGCAATATTATGATTGATGTTTATGGTCAGCTTCACATGGTCGAGGAAGGCGACCGCCTGTTCTGGAGCATGAGGAAGATGGGGATTGAACCCAATGTTGTTAGTTATAATACGCTCTTGAGGGTTTATGGAGAGTCTGAGCTGTTCGGGGAAGCTATCCATCTGTTTCGTTTGATGCAGAAGAAGGGTGTGCAACAGAATGTTGTCACCTACAATACTATGATTAATATTTACGGCAAGTCTCTTGAGCATGAGAAGGCTACAAATCTCATTCAAGAAATGCAGAATAATGGTATTCAACCAAATGCTATCACCTATTCAACTATAATATCTATCTGGGAGAAGGCAGGGAAACTGGACAGGGCAGCCATGTTGTTTCAGAAATTGAGGAGTTCAGGTGTTCAAATTGATCAGGTTCTGTACCAGACAATGATTGTAGCCTATGAGAGGGCAGGTTTGGTTGCTCATGCTAAGCGCCTTCTTCATGAGCTCAAGCGACCTGACAACATTCCCAGGGAAACTGCAATCATGGTGCTTGCTCGAGCCAGGAGAGTTGAAGAGGCTACATGGGTTTTTCGGCAGGCTTTTGCTGCTGGAGAGGTAAACGATATATCTGTGTTTGGGTGCATGATTAATCTTTACTCGAGGAACAAAAAGTACACAAATGTAGTTGAGGTGTTTGAGAAGATGAGAGAAGTTGGATACTTTCCTGATTCCAATGTTATTGCCCTCGTGCTGAATGCTTTTGGGAAGCTACGTGAGTTTGAGAAAGCAGATGCTTTATACAGTCAAATGCATGACGAAGGATGTGTTTTTCCAGATGAGGTTCATTTCCAGATGCTTAGTCTATATGGTGCAAGAAAGGATTTCACAATGGTGGAGTCATTGTTTGAGAAGCTGGATTCCAATCCCAATATCAACAAGAAGGAGTTGCATCTTGTTGTTTCCGGCATTTATGAAAGAGCAGATAGACTTAATGATGCTTCTCGAATCATGAACAGGATGAATCACAAAGCAATCGGAAATCATGATCATGCTTAG 2013 0.4486 MCAVTCSILASWPSFSSSSFPSSSSSSSSSSSKTTFTITTNPSSIASTTVAATVKDVWTRTTPSPYHRRTRTQQQMFLDHSIDMDELLASISSTQNEQELHAVMSLYNQRQLSIRFMVSLLSRETDWQRALALLDWINEKALYSPSVFAYNVVLRNVLRAKQWHLAHGLFDEMRQRGLAPDRYTYSTLITHFGKHGLLDSSLFWLQQMEQDNVSGDLVLYSNLIELSRKLGDYSKAISIFARLKASSIAPDLIAYNSMINVFGKAKLFREARLLLQEMRDNGVCPDTVSYSTLLAIYVDNERFVEALSVFSEMNDAKCPLDLTTCNIMIDVYGQLHMVEEGDRLFWSMRKMGIEPNVVSYNTLLRVYGESELFGEAIHLFRLMQKKGVQQNVVTYNTMINIYGKSLEHEKATNLIQEMQNNGIQPNAITYSTIISIWEKAGKLDRAAMLFQKLRSSGVQIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIMVLARARRVEEATWVFRQAFAAGEVNDISVFGCMINLYSRNKKYTNVVEVFEKMREVGYFPDSNVIALVLNAFGKLREFEKADALYSQMHDEGCVFPDEVHFQMLSLYGARKDFTMVESLFEKLDSNPNINKKELHLVVSGIYERADRLNDASRIMNRMNHKAIGNHDHA* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0755 670 SUPERFAMILY HCP-like 208 466 - -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Lja6g0755 670 Gene3D Tetratricopeptide repeat domain 419 491 IPR011990 GO:0005515
Lja6g0755 670 Gene3D Tetratricopeptide repeat domain 346 418 IPR011990 GO:0005515
Lja6g0755 670 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 37 663 - -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 393 427 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 530 562 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 149 181 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 428 461 IPR002885 -
Lja6g0755 670 TIGRFAM PPR: pentatricopeptide repeat domain 569 598 IPR002885 -
Lja6g0755 670 PANTHER OS03G0856100 PROTEIN 37 663 - -
Lja6g0755 670 Pfam PPR repeat family 391 434 IPR002885 -
Lja6g0755 670 Pfam PPR repeat family 145 192 IPR002885 -
Lja6g0755 670 Pfam PPR repeat family 250 294 IPR002885 -
Lja6g0755 670 Pfam PPR repeat family 321 365 IPR002885 -
Lja6g0755 670 MobiDBLite consensus disorder prediction 14 33 - -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Lja6g0755 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Lja6g0755 670 Pfam PPR repeat 569 594 IPR002885 -
Lja6g0755 670 Pfam PPR repeat 463 490 IPR002885 -
Lja6g0755 670 Pfam PPR repeat 530 558 IPR002885 -
Lja6g0755 670 Gene3D Tetratricopeptide repeat domain 492 670 IPR011990 GO:0005515
Lja6g0755 670 Gene3D Tetratricopeptide repeat domain 227 340 IPR011990 GO:0005515
Lja6g0755 670 Gene3D Tetratricopeptide repeat domain 83 226 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0755 135 664 Glycosyltransferase AT1G05670 20.446 1.43e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0755 - - gmx:100782934 1062.75