Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0743 ATGGATTTCGTGGAATTGGAGGCGGTTGAAGGCCTCCGTTGGTCATGGAATTCATGGCCGGCGGCGCCGTCGTCGAAATCGGAGCTGATAATCCCACTCAGCATCATGTGCACTCCATTGATGCAAGGCCCGGAGATGCCGCTTCTCCCCTACGATCCCCTCAGTTGCACCGGATGCGGCGCCGTTTTGAACCCTTACGCTCGCCTCGACTACCAGTCACGCATCTGGCACTGCCCCTTCTGCTCGCGCCGGAACCCTTTCCCTCGCTCCATCGCCGACGCCGATACCAATCTCCCCGCCGAGCTCTTCCCTACCTACACCACCGTGGAGTACTCTTCCTCTTGCTCTTCCCTTCATCTTCTTCCCAACGCTGGGGCTGGGAGTGTTGCTGCACCCGCTTTTGTGTTTGTTATCGATATCTCCACTCCTGAGGATGAACTGCGATTCCTCAAGAATGAACTCTTGCTTCTCCTCCACCGTTTGCCAGATAACGCCCTTGTCGCCTTGGTTACCTTCGATTCCATGGTGTATCTCCACGATCTCCAATATTCCCACTGCTCAAGGCTTGTCATCTTTCACGGTCACCGCCAACTTTTCTCCGATCAGATCCGAAAGTTTCTTAACATTAGCCGTCCCCACCAGCTGCATCTTGGGCAAATACCATCCATCCCCAAGCAGGGATTTCTGGTGTCAATTTCAGAATGTGAGTTCAGTATCACTGCTGCAATTGAAGACATCCATTCTACAAGCAACTTCAGGCCTGGCTGCCGCCCACCAAGGTGCACAGGGGCTGCAGTTTCAGCAGCCCTTGGACTTCTGGAGTGTTGCCTCATAAACACAGGCTCCAGGATCATGGTCTTCACATCTGGACCTGCTACTGTAGGCCCAGGACTGGTTGTAGACACTGACATCCGCCAGGCCATGAGAACCCACCATGACATCTTCAGTGGGCGGTCAAGACACCATCCAAAATCTTGCAGTTTCTACCAGCAGATCTCCAAGAGGCTCTCTGATGCATCTGTTGTCCTTGATCTGTTTGCTTGCTCCCTTGACCAAGTCGGAGCAGCTGAGCTTCGAGAACCTGTTGAGCAGTCGGGTGGACTTGTGATTCTTGCCGACTCTTTTGAATCGGATCAATTCAGGAAATGTCTTAGTCACCTGTTTGAACGCAATGACGAGGGTTATTTGAAGATGAACTTTGATGCGACCATTGAAATAGTGACCACTAAAGATGTGAAAATTTGTGGAGCTCTTGGTCCTTGTGTGTCTCTTAGAAAAAACAACAGTTTGGTAAGTGAGTCCGAGGTTGGACAAGGTGGTACCTGCGTGTGGAAGTTGAATACAATCACTGACAGAACTTGCATTGCCTTTTTCTTCCAAGTGAATGATGAGCAGAAAGTTCAACCCGGCTCTGCCTTTCTGATTCAGTTTATCACACGGTACAGGCAGGGGAACATGGGGCCTCGAAAACGAGTCACCACTGCTGCTAGACGATGGGTTGCAAGTGATTCCACTGATATTGCTGCTGGCTTTGATCAAGAAGCCGCAGCTTCAGTTATGGCAAGACTTGCTATTCTCAGGGCAGAGACATGCTATGCTCGAGATGTCATTAGATGGCTTGATGACCAACTAATTCGTTTTTCATCCAAGTTTGGGGACTATGTGCCAGAAGATCCTTCTTCCTTCCGCTTATCTTCCATCTTTTCCCTTTATCCTCAGTTTATGTTCCACTTGAGGCGATCTCAATTTATTGACGTGTCTAACACTACTCCTGATGAAACTGCATATTTCCGGGTTATGCTGAACCGTGAGGGTGTAGTTGGTTCTCTTATAATGATTCAACCTACACTGTTCCAATATTCTTTTGATGGGCCACCTGTTCCAGTACTCCTTGACATTCGTTCTATTTGTCCGGATTCCATCTTGCTCTTTGATTCTTTCTTCCATGTTGTGATTCATTATGGGTCCAAGGTCACTCACTGGAGGAAGGTCGGTTATGATAAGGACCCAAATCATGAGAACTTTAGAAAGCTGCTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTGGCTGAACGGGTTCCAGTGCCGAAATTTATAAGATGTGACCAGTATAGTAGTCAAGCTAGGTTTCTTCTTGCCAAATTGAATCCATCTGTTACTCAAAATTCAACTTACACAGAAGGTTCGGATATTATCTTCACCGATGATTTGAGCTTAGAAATTTTTCTAGATCAATTGCAGGTACTGGCAGTGCAAGGCTGA 2265 0.4843 MDFVELEAVEGLRWSWNSWPAAPSSKSELIIPLSIMCTPLMQGPEMPLLPYDPLSCTGCGAVLNPYARLDYQSRIWHCPFCSRRNPFPRSIADADTNLPAELFPTYTTVEYSSSCSSLHLLPNAGAGSVAAPAFVFVIDISTPEDELRFLKNELLLLLHRLPDNALVALVTFDSMVYLHDLQYSHCSRLVIFHGHRQLFSDQIRKFLNISRPHQLHLGQIPSIPKQGFLVSISECEFSITAAIEDIHSTSNFRPGCRPPRCTGAAVSAALGLLECCLINTGSRIMVFTSGPATVGPGLVVDTDIRQAMRTHHDIFSGRSRHHPKSCSFYQQISKRLSDASVVLDLFACSLDQVGAAELREPVEQSGGLVILADSFESDQFRKCLSHLFERNDEGYLKMNFDATIEIVTTKDVKICGALGPCVSLRKNNSLVSESEVGQGGTCVWKLNTITDRTCIAFFFQVNDEQKVQPGSAFLIQFITRYRQGNMGPRKRVTTAARRWVASDSTDIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDQLIRFSSKFGDYVPEDPSSFRLSSIFSLYPQFMFHLRRSQFIDVSNTTPDETAYFRVMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSICPDSILLFDSFFHVVIHYGSKVTHWRKVGYDKDPNHENFRKLLEAPELDAEQLVAERVPVPKFIRCDQYSSQARFLLAKLNPSVTQNSTYTEGSDIIFTDDLSLEIFLDQLQVLAVQG* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0743 754 SUPERFAMILY beta-sandwich domain of Sec23/24 2 511 - -
Lja6g0743 754 SUPERFAMILY Zn-finger domain of Sec23/24 44 112 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja6g0743 754 Gene3D Sec23/Sec24 helical domain 509 751 - -
Lja6g0743 754 Gene3D von Willebrand factor, type A domain 131 398 IPR036465 -
Lja6g0743 754 CDD Sec23_C 604 724 IPR037550 GO:0030127|GO:0090114
Lja6g0743 754 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 754 IPR037364 -
Lja6g0743 754 Gene3D Severin 614 718 IPR029006 -
Lja6g0743 754 Pfam Sec23/Sec24 helical domain 512 608 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lja6g0743 754 Gene3D - 50 108 - -
Lja6g0743 754 Gene3D - 6 497 - -
Lja6g0743 754 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 615 753 IPR036180 -
Lja6g0743 754 Pfam Sec23/Sec24 trunk domain 131 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lja6g0743 754 Pfam Sec23/Sec24 zinc finger 53 89 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja6g0743 754 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 754 - -
Lja6g0743 754 SUPERFAMILY Helical domain of Sec23/24 512 614 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lja6g0743 754 Pfam Gelsolin repeat 626 712 IPR007123 -
Lja6g0743 754 SUPERFAMILY vWA-like 132 390 IPR036465 -
Lja6g0743 754 Pfam Sec23/Sec24 beta-sandwich domain 400 500 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0743 Lja-Chr6 16256119 16259617 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0743 K14006 - gmx:100784000 1111.67