Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0742 ATGAAGAAGCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTCTCCGCCGCACCGGACCCGCCGGAACCTCCTTCTCCTCCTCCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCATTACCACCTCACCTCCCTCTTCTTCCTCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGTTAGCCGAGTTATCAAGAAAGGTCATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTGGTTTGCGTTCTACAGTCTGGAAGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCCCAGTACAAACATTTCAAAGACGACCTTCTCATGAATCCTTCAGAAATCACAAGGAGGATGTGCAGTTCGGCTAATTATGACACCGACGACTCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCACTCAAGGAGAACACCCTTTGAGTCTTGGCAAGACCAGCATATGGAACCAATTCTTCCAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATACACTTCTTCTGTGGTGATTCTCAGTTTGCCAAATCTAATCAGGAGTCTTTAAAGAACATATTAATTATCTTTGCAAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAGATATTGGCTCCTCTATTCTATGTGTTAAAAAATGACCCTGAGGAGGAACATGCGGCCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAATTATTGAGTGGACTCCGAGATAATTTTTGCCAACAACTTGACAATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATTGTCTCAGCTTTTAAAAGAACATGATGAAGAACTGTGGCGTCATCTTGAAGTCACGACTAAAGTCAATCCCCAGTTTTATTCATTTAGGTGGATTACTCTCCTCTTAACTCAGGAATTTAATTTCCATGATATCCTTCATATTTGGGATACCCTTTTAAGTGATCCAGAGGGTCCACAGGAGACACTGCTCCGGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGCACAGTCGGTCTAG 1278 0.4484 MKKRVPDWLNSPLWNSDHHRFSAAPDPPEPPSPPPPPPPVIHDSRTRHNGITTSPPSSSSASSSDDISHSRQGHAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQYKHFKDDLLMNPSEITRRMCSSANYDTDDSKFGSRGMLSRSQVTQGEHPLSLGKTSIWNQFFQDSDIIEQIDRDVKRTHPDIHFFCGDSQFAKSNQESLKNILIIFAKLNPGIRYVQGMNEILAPLFYVLKNDPEEEHAAFAEADTFFCFVELLSGLRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRAQSV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0742 425 Gene3D - 72 123 - -
Lja6g0742 425 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 187 296 - -
Lja6g0742 425 SMART tbc_4 95 394 IPR000195 -
Lja6g0742 425 MobiDBLite consensus disorder prediction 46 71 - -
Lja6g0742 425 ProSiteProfiles TBC/rab GAP domain profile. 100 368 IPR000195 -
Lja6g0742 425 MobiDBLite consensus disorder prediction 25 42 - -
Lja6g0742 425 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 423 - -
Lja6g0742 425 Pfam Rab-GTPase-TBC domain 197 389 IPR000195 -
Lja6g0742 425 MobiDBLite consensus disorder prediction 1 73 - -
Lja6g0742 425 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 423 - -
Lja6g0742 425 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 305 422 IPR035969 -
Lja6g0742 425 Gene3D - 304 424 - -
Lja6g0742 425 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 80 327 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0742 Lja-Chr6 16248639 16253917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0742 K24796 - lja:Lj0g3v0332239.3 684.485