Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0724 ATGAGTACGGTTGACAAGATGTTGATCAAAGGTATCCGGAGTTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGCCCCAACGGTGCCGGCAAAACCACAATCATCGAGTGCTTGAAGCTCTCCTGCACCGGCGAGTTGCCTCCTAATGCCAGGTCTGGCCACAGCTTCATTCACGATCCCAAGGTCGCCGGCGAAACTGAAACCAAGGGACAGATTAAGCTCCGTTTCAAAACCCCCGCCGGTAAAGACGTGGTTTGCATAAGGTCCTTTCAGCTCACGCAAAAGGCCTCCAAGATGGAATACAAGGCTATTGAGAGCGTGCTTCAAACCATTAATCCTCATTCCGGCGAGAAAGTTTGCCTAAGCTATAGATGCGCTAACATGGATAAAGAGATTCCTGCGCTCATGGGTGTTTCAAAGGCCATTTTGGAAAATGTTATATTCGTTCATCAGGATGAAGCAAATTGGCCCCTCCAGGATCCTTCCACGTTAAAGAAGAAGTTTGATGACATTTTTTCGGCAACGCGATACACTAAGGCACTGGAGGTTATTAAGAAACTTCACAAGGAGCAAGCTCAAGAGATAAAGACTTACAAGCTGAAACTAGAACATCTTCAAACTCTAAAAGATGCTGCTTATAAGCTTCGGGAAAGCATTGCACAGGATCAGGAGAAAATGGAGGCACTAAAAAGTCAGGTACAGCAGTTGGACGGAGGCATTCAAGATTTGGATGCTAAAATTGATCATGCTGAAAAAACATTTAAAGATTTGAGGAGGCTGCAGGAGCAGATATCAACTAAAACTGCACAACGGAGCGTCTTGTTTAAGGAACAACAGAAACAATATTCAGCTCTTGAGGAAGATAATGAAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTAGTGAAATGATTGCAATGTTAGAAACAAAAATAACCAAGTTGGAAAGAGAGATGGAGGACATTGACACTAAAAGTTCTTTCCTTCAGAAGCAAATTGATAATTCCAACTGGGAGATGGGCAAGCTACAGACAGAAGCAAAGGCTCACATGTCTCTGAAGAATGAACGCGATTCCTCAATTCAAAATCTTTTTGCTAGGTATAGCTTAGGGTCTCTTCCAAAGTCACCCTTCAGTGATGAGGTTGCTTTAAACCTCACTAGTCGAGTAAAGTCAAGATTGGGGGATCTTGAGAAGGATCTGGAAGATAAAAAGAAAGCAATCAACAATGAACTCAAGAATGCGTGGGATTGCTACATGGAAGCAAATGACTGTTGGAAAAATGTTGACGCTACAAAACAAGCTAAGATAGAGATCAAGAGTGGTAAATTAAAGAGCATTGAAGAGAAGACAAAAGAGCGTGACTCATTTGAACTTCAAATATCCAATGTAAACTTTTCTCTTATAGATGAAAGAGAAAGAAATTTGCACATTGAGGTTGAGCGAAAGACAAAGCAACTCAGTGAAAGAGAATTTGAACCGAATATACGTCATATGCAAAGTGAGCTATATAGTGTAGACCAGAAGATTAAGGGTGTCAATCGAGAGAAGGATATCATGGCTTCTGACTCGGAGGACAGAGTGAAGCTATCTCTTAAGAAGACAGAGTTGGAGAATCAGAAGAAAAAATATAAGAAGATAATTGATGACCAAAAGGATAAAATAAGAAGGGTGCTAAAAGGGAGGGTTCCTCCTGATAAGGACATGAAGAAGGAAATTACAAAAGCACTAAGGACTGTTGGAACTGAATTTGATGACCTGAATGTAAAATTCCGTGAAGCTGAGAAAGAAGTCAATTTGTTGCAGATGAAGATACAAGAGGTTAACAGTAATCTATCCAAGCACCACAAGGATATGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCGTTGGATTCACAATGTTCTGGAATTGACTCTTATCTCAAAGTTTTAGAGTCTTCCAAGGAAAAAAGAGATGTACAGAAAAGCAAATATAACATTGCGGATGGCATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATTTTTGCCCTTGCTGTGAGCGCCCTTTCTCTACAGAAGAAGAAGATAGTTTTGTCAAGAAGCAAAGAGTGAAGGCCGCCAGCTCCGCTGAACATATGAAAGTTCTTGCTGTGGAGACATCAAGCGCAGACTCACATTATCAGCAGTTAGACAAGCTTCGTATGGTTTATGAAGAATATATTAAACTTAGTAAGGAGGCAATCCCTAATGCTGAAAAGGAACTTCAGCAACTTAAGGAAGAGCTGGATCAAAAATCTCAGGCTCTTGATGATATTTGCGGTGTTTTAGCTCAAGTGAAGACCGAGAAGGATTTGGTTGAGGCACTGGTCCAACCTGTTGAAAACGCTGACCGGATTTTCCAAGAAATTGAAGCTCAACAAAAGCAAGTTGAGGATTTAGAATATAAGCTTGATTTTCGAGGACCAGGAGTGAGGACGCTGGAAGAAATTCAATTAGAGCTTAATGCATTGCAGACCACAAAGGACAATTTGCATACTGAATTGGAGAAGTTGAGAGAAGAACAGAGGTATATGGAGAATGATCTGTCAAATATTCGAATACGGTGGCACAGTCTAAGGGAGGAGAAAGGGGGAGTAGCTAACACATTGCAAGTTGTTAAACGATTAGAAGAAGAAATAGAAAGTTTGACTGAAGAAATGAACCAAATAGATCTTGCTGAGAAGGATCTGGCAGAAACTCTTGGACCTTTATCCAAGAAGAAAGATAAATTACTTGCTGACCATGATGAACTAAAAGCAAGACTTAACCAAGAGTATGAAGATCTGAATGAACGAAAAAGAAGTTATCAGCAAGAAGCCCAAGCAATTTTTGGAATGAATTTTAAAATTAAAGAGTACTCTGATTTAAAGAAAGGAGACAGGTTGAAGGAACTGCAAGAAAAGAAATCCCAATTAGAATCTAATCTTCAAAGTGGTGAAACCAGGAAGCAGGAAATTTCAGTTGAACTAAACAATAATAAAGATTCGATGCGAAATCAAGATCGATTAAGAAGAAATATTGAGGATAACTTAAATTACAGGAAAACAAAGGCTGAAGTAGATGAGCTAGCATGTGAAATTGAAGCGCTTGAAGGAAATATACTGAAGGTTGGTGGGATTTCCACATTTGAAACTGAGCTCCAGAAACTATCCCAGGAGAAGGAGAGGCTTGTTTCAGAGTTACATAGGTGCCAGGGAACAATGTCTGTTTACCAGAGCAATATTTCCAAGAATAAGATTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTTTGATCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAGGACCTGGACAGATACTACAATGCATTGGATAAAGCTCTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATCATTAGGGAATTGTGGCAACAGACTTATAGAGGACAGGATATAGACTACATTAGTATTCATTCAGATTCCGAAGGTGCCGGCACCCGATCCTACAGCTACAGGGTTCTCATGCAGACTGGCGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTACTGGCATCTCTTATCATTCGTTTGGCCTTAGCTGAAACGTTTTGCCTCAACTGTGGAATACTCGCATTGGATGAACCAACCACAAACTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATGAGCGTTTTGCACAACTGATTGGTCGGCGCCAGCATGCAGAGAGATATTATCGAGTCGCGAAAGATGATCATCAGCACAGTATTATCGAATCTCAAGAGATATTTGACTGA 3951 0.4067 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTPAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHSGEKVCLSYRCANMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAQDQEKMEALKSQVQQLDGGIQDLDAKIDHAEKTFKDLRRLQEQISTKTAQRSVLFKEQQKQYSALEEDNEDTDEELMEWKTKFSEMIAMLETKITKLEREMEDIDTKSSFLQKQIDNSNWEMGKLQTEAKAHMSLKNERDSSIQNLFARYSLGSLPKSPFSDEVALNLTSRVKSRLGDLEKDLEDKKKAINNELKNAWDCYMEANDCWKNVDATKQAKIEIKSGKLKSIEEKTKERDSFELQISNVNFSLIDERERNLHIEVERKTKQLSEREFEPNIRHMQSELYSVDQKIKGVNREKDIMASDSEDRVKLSLKKTELENQKKKYKKIIDDQKDKIRRVLKGRVPPDKDMKKEITKALRTVGTEFDDLNVKFREAEKEVNLLQMKIQEVNSNLSKHHKDMESRKRFIESKLQSLDSQCSGIDSYLKVLESSKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERPFSTEEEDSFVKKQRVKAASSAEHMKVLAVETSSADSHYQQLDKLRMVYEEYIKLSKEAIPNAEKELQQLKEELDQKSQALDDICGVLAQVKTEKDLVEALVQPVENADRIFQEIEAQQKQVEDLEYKLDFRGPGVRTLEEIQLELNALQTTKDNLHTELEKLREEQRYMENDLSNIRIRWHSLREEKGGVANTLQVVKRLEEEIESLTEEMNQIDLAEKDLAETLGPLSKKKDKLLADHDELKARLNQEYEDLNERKRSYQQEAQAIFGMNFKIKEYSDLKKGDRLKELQEKKSQLESNLQSGETRKQEISVELNNNKDSMRNQDRLRRNIEDNLNYRKTKAEVDELACEIEALEGNILKVGGISTFETELQKLSQEKERLVSELHRCQGTMSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGRRQHAERYYRVAKDDHQHSIIESQEIFD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0724 1316 Coils Coil 595 622 - -
Lja6g0724 1316 Coils Coil 987 1007 - -
Lja6g0724 1316 Coils Coil 805 828 - -
Lja6g0724 1316 Coils Coil 933 964 - -
Lja6g0724 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Lja6g0724 1316 Coils Coil 1038 1058 - -
Lja6g0724 1316 Coils Coil 284 343 - -
Lja6g0724 1316 Coils Coil 221 269 - -
Lja6g0724 1316 Coils Coil 891 925 - -
Lja6g0724 1316 Coils Coil 839 880 - -
Lja6g0724 1316 Pfam Rad50 zinc hook motif 689 724 IPR013134 -
Lja6g0724 1316 Pfam AAA domain 7 245 IPR038729 GO:0140664
Lja6g0724 1316 Gene3D - 4 297 IPR027417 -
Lja6g0724 1316 Coils Coil 1065 1092 - -
Lja6g0724 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 276 IPR027417 -
Lja6g0724 1316 PANTHER RAD50 1 1314 - -
Lja6g0724 1316 Gene3D - 1066 1314 IPR027417 -
Lja6g0724 1316 Coils Coil 405 425 - -
Lja6g0724 1316 Coils Coil 753 787 - -
Lja6g0724 1316 CDD ABC_Rad50 4 170 IPR045171 -
Lja6g0724 1316 TIGRFAM rad50: rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Lja6g0724 1316 Coils Coil 538 565 - -
Lja6g0724 1316 Coils Coil 627 647 - -
Lja6g0724 1316 Coils Coil 197 217 - -
Lja6g0724 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Lja6g0724 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1287 IPR027417 -
Lja6g0724 1316 Gene3D - 836 970 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0724 K10866 - jre:109008437 2104.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0724 6 15932974 15946801 Lja6g0724 6 15932974 15946801 ECH