Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0723 ATGGATCCGGTGAACGACTGGGGCAACACGCCGCTATCAACGGTGGACCCGGAGATCCACGACCTCATCGAGCACGAGAAGCGTCGCCAATGCCGCGGCATCGAGCTCATAGCATCGGAGAATTTCACCTCCTTCGCCGTCATCCAAGCTCTTGGCAGCGCCCTCACCAACAAATACTCCGAAGGCATGCCCGGTAACCGCTACTACGGCGGCAATGAGTTCATCGACCAGATCGAGAATCTCTGCCGCTCTCGCGCTCTCCAGGCCTTCCACCTCGACGCCGCCGCGTGGGGTGTTAACGTCCAGCCTTATTCCGGTTCTCCGGCGAATTTCGCCGCCTACACCGCCGTGCTCCAGCCGCATGATCGTATCATGGGGCTGGATCTTCCTTCCGGCGGGCATTTGACTCATGGGTACTACACCTCCGGCGGGAAGAAGATCTCGGCGACTTCGATTTACTTTGAGAGTTTGCCTTACAAGGTGAATTTCAGTACTGGGTATATTGACTATGATAGGTTGGAGGAGAAGGCTTTGGATTTCAGGCCAAAGTTGATTATCTGTGGTGGTAGTGCTTACCCTAGGGACTGGGATTATGCCAGGTTTAGACAGGTTGCTGATAAGTGTGGTGCACTTCTGCTATGTGATATGGCTCACATTAGTGGCCTTGTTGCTGCTCAGGAAGCAAATAACCCATTTGAGTACTGTGACATTGTCACAACAACAACACACAAGAGCTTGAGGGGGCCCAGGGCGGGTATGATCTTCTACCGGAAGGGACCTAAACCGCCCAAGAAGGGCCAGCCGGAGAATGCAGTGTATGATTTTGAAGACAAGATCAACTTTGCAGTCTTCCCCTCCCTTCAGGGTGGTCCTCACAACCACCAGATCGGCGCCCTTGCTGTCGCTTTGAAACAGGCCATGACACCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCTATTGGAAATTACTTGATGAGCAAAGGTTACAGCCTTGTCACTGGAGGAACTGAGAACCATCTTGTCTTGTGGGATCTTCGACCTCTCGGATTGACCGGCAATAAGGTGGAGAAACTTTGTGACCTCTGCAACATTACTGTGAACAAAAATGCTGTTTTTGGTGATAGCAGTGCCTTGGCTCCTGGAGGAGTAAGAGTTGGAGCCCCAGCTATGACTTCCAGGGGCTTGGTTGAGAAGGACTTTGAACAGATCGGAGAGTTCCTTCACCGTGCAGTGTCTCTCACGCTGGAGATCCAGAACGAGTATGGCAAACTTTTGAAGGATTTCAACAAGGGCTTGGTGAACAATAAGGCTATTGAAGAACTCAAAGCTGATGTTGAGAAGTTCTCAGCCTCATTCGATATGCCTGGATTCCTAGTATCTGAGTTGAAGTACAAGGATTAG 1416 0.5134 MDPVNDWGNTPLSTVDPEIHDLIEHEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALQAFHLDAAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFSTGYIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMTPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEQIGEFLHRAVSLTLEIQNEYGKLLKDFNKGLVNNKAIEELKADVEKFSASFDMPGFLVSELKYKD* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0723 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lja6g0723 471 CDD SHMT 15 453 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lja6g0723 471 SUPERFAMILY PLP-dependent transferases 7 463 IPR015424 -
Lja6g0723 471 Gene3D - 41 316 IPR015421 GO:0003824
Lja6g0723 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lja6g0723 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Lja6g0723 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lja6g0723 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 - -
Lja6g0723 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Lja6g0723 471 Pfam Serine hydroxymethyltransferase 12 411 IPR039429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0723 Lja-Chr6 15927414 15930150 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0723 K00600 - gmx:100815417 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0723 6 15927414 15930150 Lja6g0723 6 15927414 15930150 ECH