Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0719 ATGAAAGGCCTTTTCATTGTCCTTTTAATCATGTTTGTTGCTACACCTACCTTGTGTGCTAGAGTAACACCTAATGCAGGATCTAGAGTCTTCAATATTTTTAGCTATGGTGCAAAAGGGGATGGTCAAACTGATGATTCACAAGCATTTGAGAAAGCATGGGGAGATGTGTGTAATGCAACTCAAGGCACCACAACGCTTCTCATACCTAAAGGGAAATCATTCATGTTACGACCTGTGTCGTTCGAGGGTCCTTGCAAACCTGCCGCTATTAACATTCAGTTTGAGGGCACTATCATTGCCCCAAAAAGTGTTGAAGCTTGGAAATGGCCAGAAAATAATAATAGAGAATCATGGTTACGATTCTGGCGGATAAATGGTCTTGTTATCAAGGGAGGAGGCACATTTGATGGCCAAGGTTCTGCGTGGTGGAACAAGCACTCCGACAGGCCTATAGCACTTCAATTCCTTAATTGTGAGAATCTAGCTCTTAAAACGTTGAACCTAGTCAACAGTACAAGAAGCCATATAACTATAGCTTCATGCAAAGACTCTATCATCACTGACATTTATATTTCTGCTCCGGATGATAGTCCTAACACAGACGGGATTAATATCTCAGGATCATCTAATATTCTCATTCAAGATTCAAAGATTGAAAGTGGGGATGATTGCATTGCCATTAATCATGGTTCTACCTTTATCAACGTAACCGGTGTTATGTGTGGTCCTGGCCATGGAATTAGTGTTGGAAGCCTTGGAAAAAATGGAGCGTATAATACCGTAGAAGATATCTATGTGAGAAATTGCACTTTTCAAGGAACTATGAATGGAGCCCGAATTAAGACATGGATGGGAGGATCTGGGTATGCAAGGAAGATAAGATTTGAAGATATTATACTCATTGGAGTAAAGAATCCTGTGATCATTGACCACACGGCGGTAAAAGTGAGTGATGTTACTTACAGTAATGTGAGGGGAACCTCAGCTTCTGAGAATGCAATCATATTGAGTTGCGACGCTAGCGTTGGTTGCACGGACATTGTATTAAATAATATTGACATAACCTTAAAGGTCACAAATGGGCTACTCAGCAACACAACACCGACTATACGAGAGCAATTCTCTTTTAATAAAATTCCTGTGTTTTTTTTTAAATATTATTCTTGA 1170 0.3991 MKGLFIVLLIMFVATPTLCARVTPNAGSRVFNIFSYGAKGDGQTDDSQAFEKAWGDVCNATQGTTTLLIPKGKSFMLRPVSFEGPCKPAAINIQFEGTIIAPKSVEAWKWPENNNRESWLRFWRINGLVIKGGGTFDGQGSAWWNKHSDRPIALQFLNCENLALKTLNLVNSTRSHITIASCKDSIITDIYISAPDDSPNTDGINISGSSNILIQDSKIESGDDCIAINHGSTFINVTGVMCGPGHGISVGSLGKNGAYNTVEDIYVRNCTFQGTMNGARIKTWMGGSGYARKIRFEDIILIGVKNPVIIDHTAVKVSDVTYSNVRGTSASENAIILSCDASVGCTDIVLNNIDITLKVTNGLLSNTTPTIREQFSFNKIPVFFFKYYS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0719 389 PANTHER - 20 363 - -
Lja6g0719 389 SMART pbh1 209 230 IPR006626 -
Lja6g0719 389 SMART pbh1 312 339 IPR006626 -
Lja6g0719 389 SMART pbh1 262 283 IPR006626 -
Lja6g0719 389 SMART pbh1 182 208 IPR006626 -
Lja6g0719 389 Pfam Glycosyl hydrolases family 28 63 357 IPR000743 GO:0004650|GO:0005975
Lja6g0719 389 PANTHER - 20 363 - -
Lja6g0719 389 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Lja6g0719 389 Gene3D - 15 382 IPR012334 -
Lja6g0719 389 SUPERFAMILY Pectin lyase-like 19 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0719 Lja-Chr6 15832455 15836895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0719 29 358 Glycoside Hydrolase AT5G27530 46.939 6.53e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0719 K01184 - qsu:111990272 375.555