Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0714 ATGTCACTCTCTCGCCATGCATACGCACTCAAGTCTCAACTCAGCTCTGTGGCACGCCAGAGCCCATTCCTCACTAAAAAACTTCACGCACAAATCATCAAATCTGGTCTCAGCCAACACGAACCCTTCCCCAACACACTCCTTGACGCCTACGGCAAATGCGGTCTCCTCCAAGATGCACTCCAACTGTTCGACACATTGCCCCACCGAGACCTCGTGTCCTGGGCCTCTGTCCTCAGCGCCTGTAACCTCGCCAACCTCCCCCACCGTGCTCTCTCCATCTCACGCTCCCTTCTCCATCAGGGTTTCCAACCCGACCACTTCGTCTTCTCGACTCTCATCAAGGCTTGTGCTAACATGGGTCCTCTTCATGTGAACCAAGGGAAACAAGTCCATGCTCACTTCTTGCTTTCGCCCTACGCCAATGATGATGTGGTTAAGTCAACACTGGTTGATATGTATGCTAAATTTGGGTTGCCGGATTACGGGCGCGCTGTTTTTGACTCGATTTCTTCGTTGAATTCTATTTCTTGGACTGCCATGATATCTGGGTACGCGCGGAGTGGACGGAGGTCTGAGGCTCTACGACTGTTTCGTGAATCGCCATACAAGAATTTGTTTGCTTGGACTGCTCTGATATCCGGGTTGGTGCAGAGCGGGAATGGCGTTGATGCGTTCTACACGTTTGTTAAAATGCGTCAAGAAGGGATTACTATAGCGGACCCGTTGGTTCTGTCGAGTGTTGTTGGTGCTTGTGCTAATTTAGCTGTTTGGGAGCTTGGGAAACAGGTGCATGGTCTGGTCATAGGACTTGGTTATGAGTCTTGTGTGTTTATAAGCAATGCCTTAGTAGACATGTACGCCAAATGCAGTGACCTTGTTGCTGCAAAATATATCTTCTGTGAGATGAGCAGAAAGGATGTAGTTTCTTGGACTTCAATAATTGTTGGCACTGCCCAGCATGGACAGGCTGAGGAGGCATTGGCTTTATATGATGACATGGTTTCCGCCCGGGTTAAGCCAAATGAGGTCACCTTTGTTGGGTTGATCTATGCCTGCAGTAACGTTGGTTTGGTTAGCAAGGGCCGTGCTTTGTTTAGGTCTATGGTTGAAGATTATGGGATTAAGCCCTCTCTTCAGCACTATACTTGCTTGCTGGATCTTTTTAGTCGATCAGGGCACCTTGACGAGGCAGAGAATCTCATTAGAACAATGCCGGTTAGCCCCGACGAACCTACTTGGGCTGCTTTACTTAGTGCTTGTAAGCACCACGGTAACACCCAGATGGCAGTAAGGATTGCTGATAAACTATTGTGTTTAAAACCAGAAGATCCTTCCTCCTATATATTGTTATCTAATGTGTATGCCGGCGCTAGTATGTGGGAGAATGTTTCAAAGGTGAGGAAGCTAATGATGGTTAAGGAAGTGAAAAAGGAACCAGGTTATAGCTGCATTGACTTGGGAAAGGAAAGCCATGTATTTTATGCTGGAGAGACATCTCATCCAATGAAGGATGAGATTCTAGGTTTAATGAGGAAGCTAGATGCAGAGATGAGGAAAAGGGGTTATGTTCCTGATACCAGCTATGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACTTTTTTGGCATAGTGAGAGGTTGGCTGTTGCCTATGGGCTCCTTAAGGCTGTTCCAGGGACAATTATACGCATAGTGAAAAATCTTCGTGTTTGTGGAGATTGTCATACTGTTCTGAAGCTCATCAGCACTATAGAGAGTAGGGAAATTTATGTCCGAGATGCTAAAAGATATCACCATTTTAAGGATGGGAAATGTTCGTGTAACGACTTCTGGTGA 1845 0.465 MSLSRHAYALKSQLSSVARQSPFLTKKLHAQIIKSGLSQHEPFPNTLLDAYGKCGLLQDALQLFDTLPHRDLVSWASVLSACNLANLPHRALSISRSLLHQGFQPDHFVFSTLIKACANMGPLHVNQGKQVHAHFLLSPYANDDVVKSTLVDMYAKFGLPDYGRAVFDSISSLNSISWTAMISGYARSGRRSEALRLFRESPYKNLFAWTALISGLVQSGNGVDAFYTFVKMRQEGITIADPLVLSSVVGACANLAVWELGKQVHGLVIGLGYESCVFISNALVDMYAKCSDLVAAKYIFCEMSRKDVVSWTSIIVGTAQHGQAEEALALYDDMVSARVKPNEVTFVGLIYACSNVGLVSKGRALFRSMVEDYGIKPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVSPDEPTWAALLSACKHHGNTQMAVRIADKLLCLKPEDPSSYILLSNVYAGASMWENVSKVRKLMMVKEVKKEPGYSCIDLGKESHVFYAGETSHPMKDEILGLMRKLDAEMRKRGYVPDTSYVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLISTIESREIYVRDAKRYHHFKDGKCSCNDFW* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0714 614 Gene3D Tetratricopeptide repeat domain 324 506 IPR011990 GO:0005515
Lja6g0714 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Lja6g0714 614 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 602 - -
Lja6g0714 614 Pfam PPR repeat family 306 354 IPR002885 -
Lja6g0714 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Lja6g0714 614 Gene3D Tetratricopeptide repeat domain 140 259 IPR011990 GO:0005515
Lja6g0714 614 Gene3D Tetratricopeptide repeat domain 17 136 IPR011990 GO:0005515
Lja6g0714 614 Pfam PPR repeat 45 66 IPR002885 -
Lja6g0714 614 Pfam PPR repeat 382 405 IPR002885 -
Lja6g0714 614 Pfam PPR repeat 176 200 IPR002885 -
Lja6g0714 614 Pfam PPR repeat 208 237 IPR002885 -
Lja6g0714 614 Pfam E motif 424 485 IPR046848 -
Lja6g0714 614 TIGRFAM PPR: pentatricopeptide repeat domain 176 200 IPR002885 -
Lja6g0714 614 TIGRFAM PPR: pentatricopeptide repeat domain 281 309 IPR002885 -
Lja6g0714 614 TIGRFAM PPR: pentatricopeptide repeat domain 344 378 IPR002885 -
Lja6g0714 614 TIGRFAM PPR: pentatricopeptide repeat domain 208 237 IPR002885 -
Lja6g0714 614 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Lja6g0714 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lja6g0714 614 PANTHER OS11G0661000 PROTEIN 12 602 - -
Lja6g0714 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0714 Lja-Chr6 15806896 15808843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0714 8 614 Glycoside Hydrolase AT3G49170 37.419 3.20e-136 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0714 - - gmx:100782048 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0714 6 15806896 15808843 Lja6g0714 6 15806896 15808843 ECH