Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0575 ATGGCTCTGTTTCTCTTCCTCTTCTCCTTTTTTCTACTCTCTGTTAACCCCTCAGTTCAGTCCAACACTACCAACAACCCAAAACCACTCTCACTCTCTTTCCCTCTTACATCACTTCCTCTTTCTACCAACACCACCTCAAAACTGCTCTACACCTCTCTGTTTTCATCTTCTAAACACACCACCCCACATTTCAAAACACCACCATCTTCATCATCACAACACAGTGACAGGTTCTCTTTGAAATACTCCATGGCTCTCATAGTGTCTCTCCCCATAGGGACCCCACCACAGGTTCAACAAATGGTGCTCGACACTGGAAGCCAGCTGTCATGGATTCAGTGTCGTCATCATAACCGAAACGCGCCTCCTCCAACGGCGTCGTTTAACCCTTCTCTCTCTTCCACTTTCTCTATCCTCCCATGCTCTCACCCTCTCTGCAAACCGCGAATTCCCGATTTTACCCTCCCAACCTCCTGCGACCAGAACCGCCTCTGCCACTACTCTTACTTCTACGCCGACGGGACCTACGCCGAGGGCAATCTCGTCCGGGAGAAATTCACCTTCTCTCGTTCCCGTGTTACCCCTCCCCTCATCCTCGGTTGCGCCACTGAGTCCACCGATGCCAGGGGCATTTTGGGAATGAATCTCGGACGGTTATCCTTCGCCTCACAATCCAAGATCACGAAATTCTCATACTGCGTCCCTTCCCGGAATACCCGACCCGGATCAGTCCCGACCGGGTCGTTCTACCTCGGCAACAACCCGAGCTCAAGCGGGTTCAGGTTTGTCTCGATGCTGAGTTTTCCTCAGCGTCAGCGCATGCCGAACCTTGATCCCTTAGCCTACACCGTCGCGCTGCGGGGGATAAGCGTCGGCGGGAAGAAACTTCCCATCTCTCCGGCGGTTTTCACGGCGGATGCCGGCGGGTCGGGTCAGACAATGGTTGATTCCGGATCCGAGTTCACGTACTTGGTTAGCGCAGCATATGATAAGGTGCGGGAGGCAGTAGTGAGGGCTGTGGGCTCCAGGATGAAGAAGGGGTACGTGTACGGTGGGATAGCTGACATGTGTTTCAACAGTAGAGATGCGGTTCAGATGGGACGGTTGATAGGGGAGATGGTGTTTGAATTTGAAAAGGGGGTGGAGATTGTGGTTCCAAAAGAGAGGGTGCTTGCTGACGTGGGAGGTGGGATCCACTGCATTGGGATTGGGAACTCTGATAAATTGGGTGCGCCCAGTAACATTATAGGGAATTTTCATCAACAGAATCTGTGGGTTGAGTTTGATCTGGCCAATCGTAGAGTGGGTTTTGGTAGAGCTGATTGTAGCAGATTGGCTAAGTAG 1347 0.5219 MALFLFLFSFFLLSVNPSVQSNTTNNPKPLSLSFPLTSLPLSTNTTSKLLYTSLFSSSKHTTPHFKTPPSSSSQHSDRFSLKYSMALIVSLPIGTPPQVQQMVLDTGSQLSWIQCRHHNRNAPPPTASFNPSLSSTFSILPCSHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSRVTPPLILGCATESTDARGILGMNLGRLSFASQSKITKFSYCVPSRNTRPGSVPTGSFYLGNNPSSSGFRFVSMLSFPQRQRMPNLDPLAYTVALRGISVGGKKLPISPAVFTADAGGSGQTMVDSGSEFTYLVSAAYDKVREAVVRAVGSRMKKGYVYGGIADMCFNSRDAVQMGRLIGEMVFEFEKGVEIVVPKERVLADVGGGIHCIGIGNSDKLGAPSNIIGNFHQQNLWVEFDLANRRVGFGRADCSRLAK* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0575 448 Gene3D Acid Proteases 82 248 IPR021109 -
Lja6g0575 448 CDD pepsin_A_like_plant 88 443 IPR034161 -
Lja6g0575 448 SUPERFAMILY Acid proteases 88 446 IPR021109 -
Lja6g0575 448 PANTHER ASPARTYL PROTEASE-RELATED 6 448 IPR001461 GO:0004190|GO:0006508
Lja6g0575 448 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 448 - -
Lja6g0575 448 Pfam Xylanase inhibitor C-terminal 282 439 IPR032799 -
Lja6g0575 448 Pfam Xylanase inhibitor N-terminal 88 244 IPR032861 -
Lja6g0575 448 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 102 113 IPR001969 GO:0004190|GO:0006508
Lja6g0575 448 ProSiteProfiles Peptidase family A1 domain profile. 87 439 IPR033121 -
Lja6g0575 448 Gene3D Acid Proteases 249 448 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0575 Lja-Chr6 13914255 13916065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0575 89 448 Miscellaneous Gene Families AT1G44130 23.821 3.65e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0575 - - gmx:100803089 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0575 6 13914255 13916065 Lja6g0575 6 13914255 13916065 PCT