Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0574 ATGTCTCTGCGGGTAGCAGCAGCAAATTTGCTCAAAAAATTTCGCTTTCCTTCTTCTCGAGCCTTCCCTGCCTCTACCGTACCCACAAATTCATTGCCCATCTCATTTTCTGGTAAAGTTAGACTTTCCCACTGGTATCAAACTAGAGCATACAGTTGCAGAGATCCTTGTCTTTGGATTGTTGTATCTGGATATGCAGCGGTGACTCTGGGGATTAGTGCCTCCACTGTTTTTGCTGAAGATGTATCAACTGAAACTTCCATTGATAATGACTCTGGGGATGAGTTAAATGGATTCAGAAAAATTGAGGATGGTTCTGTAGTATCAAATACACACACAGCAAAATGGAGAATCTTTACTGATAAAGCCAGAGATTTTTTCCTACAGGGAAAACTAGATGAAGCTGAAAAACTCTTCCTTTCTGCTGTGCAAGAAGCTAAAGAAGGTTTTGGCAAGCAAGATCCACATGTTGCATCTGCATGCAACAATCTGGCAGAGTTTTACAGGATCAGAAAGGAATTTGACAAAGCAGAACCGTTGTATTTGGAAGCTATCAACATATTAGAGGAGTCTTTTGGTCCTGATGATATACGGGTTGGGGCTGCTGCTCATAACCTTGGGCAGTTCTACCTTGGACTGCGAAAGTTGGAAAAAGCCCGTCTTACCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTAGGATATGGCCATTCAGAATGTTCAGATACAATGTATCATCTTGGGGTGGTGCTGAATCTTGAAGGAAAAGAAAGAGATTCTGAGTTACTGATTCAAGACTCTATAAGGATGCTAGAGGACGGCGGGGAAGGGGAGTCATTTGCATGCATTAAAAGACTTCGGTACCTCTCAAAGATATATTTGAAATCACATCGTCTTGCTGAGGCAGAGATGGTGCAGAGAAAGATCCTGCATATTATGGAATTGTCAAAGGGATGGAATTCCTTGGATACAGTTATTGCAGCTGAAGCTTTGGCTCTTACCCTGCAAGCATCTTGCAATACAAAAGATTCAAAAGAGCTTCTTGAAAGATGCCTTGATGCCCGAAAAGCAGTACTTCCTGGTGACCATATTCAGATTGGTGCAAACCTACTTCATTTGGCAAGAGTGGCAATGCTTGATTCCAGCCAACATAAAAAAGGGGATGTTTCTAGAGCCAAATCTGAGCTCGAGACGGCAAAGGGCCATTTGCATAATTCCATAAGAATAGCACGCCAATTTCTCAATAAGATATTGAAACAAAAAGATAAGCGGAAGAAATACAGTGTGCCAGGAGATGCTAGAAAGGAAGGCCAAGCTGCGTTGCTCATATTGTTGCAATCACTCAGTACTTTGTCATCATTGGAGTTGGCTATGGAAGAATTAACGGAAACTCAGGAAGGGAATATTAACCTTGAGGCTAAGGAGGCACTTGTTCAATGCATTTCTGCTTACAAGGAGTTTGTGCATGAGAAGTCAGTTGCTGATGCCCCTGAAATAAAGAACGAGCATCTTTCCTGTTTAAAGCGCATTCAAAACTTGCTTGGCAATAAATTGGATTAA 1563 0.4191 MSLRVAAANLLKKFRFPSSRAFPASTVPTNSLPISFSGKVRLSHWYQTRAYSCRDPCLWIVVSGYAAVTLGISASTVFAEDVSTETSIDNDSGDELNGFRKIEDGSVVSNTHTAKWRIFTDKARDFFLQGKLDEAEKLFLSAVQEAKEGFGKQDPHVASACNNLAEFYRIRKEFDKAEPLYLEAINILEESFGPDDIRVGAAAHNLGQFYLGLRKLEKARLTYERALKIKRRVLGYGHSECSDTMYHLGVVLNLEGKERDSELLIQDSIRMLEDGGEGESFACIKRLRYLSKIYLKSHRLAEAEMVQRKILHIMELSKGWNSLDTVIAAEALALTLQASCNTKDSKELLERCLDARKAVLPGDHIQIGANLLHLARVAMLDSSQHKKGDVSRAKSELETAKGHLHNSIRIARQFLNKILKQKDKRKKYSVPGDARKEGQAALLILLQSLSTLSSLELAMEELTETQEGNINLEAKEALVQCISAYKEFVHEKSVADAPEIKNEHLSCLKRIQNLLGNKLD* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0574 520 Coils Coil 455 475 - -
Lja6g0574 520 Gene3D Tetratricopeptide repeat domain 277 486 IPR011990 GO:0005515
Lja6g0574 520 Pfam Tetratricopeptide repeat 159 231 - -
Lja6g0574 520 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 516 - -
Lja6g0574 520 SMART tpr_5 200 233 IPR019734 GO:0005515
Lja6g0574 520 SMART tpr_5 158 191 IPR019734 GO:0005515
Lja6g0574 520 SMART tpr_5 116 149 IPR019734 GO:0005515
Lja6g0574 520 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Lja6g0574 520 SUPERFAMILY TPR-like 116 257 IPR011990 GO:0005515
Lja6g0574 520 Gene3D Tetratricopeptide repeat domain 112 276 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0574 - - ccaj:109796654 789.26