Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0565 ATGACTATGGTTGTGCATTTTCTTCTGTTGCTTTTTGCAGTTTCTGCTGTTGCTGCTGATGAAGAACCATTTATTGGAGTGAATATTGGAACAGATCTCTCAGACATGCCTCACCCCACTCAAGTAGTAGCACTGCTTAAATCCCAAAAACTTCAACATGTCAGATTGTATAATGCTGACCAAGCTATGCTCGTTGCACTTGCAAACACTGGAATTCAAGTTGTTGTGTCTGTCCCCAATCAAGAGCTCCTATCAATTGGTCAATCAAATTCCACAGCAGCAAAATGGGTTTCTACCAATGTGGTAGCACATTATCCAGCTACTAATATCACAGCAATTTGTGTTGGTTCTGAGGTTTTAACCACCCTCCCTAATGCAGCAAAACTACTAGTCAACGCTCTTAAGTACATTCATTCAGCCCTTGTTGCGTCGAATCTCGATCGCCAGATTAAAGTTTCAACACCCCTTTCCTCTACCCTCATCCTTGATTCATTTCCACCTTCCCAAGCCTTCTTTAACCGCTCGCTGAATCCAGTCTTGGTCCCAATGCTCGATTTCTTGCAATCCACCGGCTCTTATCTCATGCTTAACATCTACCCTTACGACGACTACATGCTGTCGAATGGTGTGATTTCATTGGACTATGCACTCTTCAAGCCTCTTCCTCCCAACAAGGAAGCTATTGATTCTAACACCCTTCTCCACTACTCCAATGTGTTTGATGCTCTGGTTGATGCAGCATACTTTGCCATGTCTTATCTCAACTACACTAACATTCCTGTGGTGGTGACTGAGACAGGTTGGCCCTCAAAGGGTGACTCTAATGAGCCGGATGCAACGCTCGACAATGCCAATGCTTACAACAGCAACTTGATCAAGCATGTGCTGAATGTAACCGGAACTCCAAAGCGCCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGATACAAAGGACGGGCCATTGTCAGAGAAAAACTGGGGATTGTTTGATGCTGATGGGAAACCTATTTACATTTTACACTTGACAGGATCAGGAGCAGTGTTGGCGAATGACACTACCAACCAAACTTACTGCGTTGCGAAGGTCGGTGCTGATCCGAAGATGCTGCAGGCTGGGATAGACTGGGCATGTGGACCTGGCAAGGTGGATTGCTCTCCATTGTTGCAAGGAGAGGCATGCTATGAACCAGACAATGTGAATGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTGAGTCATGTAATTTCAATCAAATGGCTACAATCACCACCTCAAATCCAAGTCATGGTTCCTGTATATTTCCAGGAAGTCTTGGGCAAAATGGCACCTTTGCCAATGTCACTGCACCATCACTGAATTCCACAAGTTCATCTTCTTCGGCATGCAATCTCCACAAATGTGATTTGAGAATTAAAAGCCTTCTGATGGTGATAGGATTTCAAATATTGGGAGTGGTTGTGCTATAA 1503 0.4405 MTMVVHFLLLLFAVSAVAADEEPFIGVNIGTDLSDMPHPTQVVALLKSQKLQHVRLYNADQAMLVALANTGIQVVVSVPNQELLSIGQSNSTAAKWVSTNVVAHYPATNITAICVGSEVLTTLPNAAKLLVNALKYIHSALVASNLDRQIKVSTPLSSTLILDSFPPSQAFFNRSLNPVLVPMLDFLQSTGSYLMLNIYPYDDYMLSNGVISLDYALFKPLPPNKEAIDSNTLLHYSNVFDALVDAAYFAMSYLNYTNIPVVVTETGWPSKGDSNEPDATLDNANAYNSNLIKHVLNVTGTPKRPGIAVSTYIYELYNEDTKDGPLSEKNWGLFDADGKPIYILHLTGSGAVLANDTTNQTYCVAKVGADPKMLQAGIDWACGPGKVDCSPLLQGEACYEPDNVNAHANYAFDTYYHQMGKSPESCNFNQMATITTSNPSHGSCIFPGSLGQNGTFANVTAPSLNSTSSSSSACNLHKCDLRIKSLLMVIGFQILGVVVL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0565 500 Pfam X8 domain 362 433 IPR012946 -
Lja6g0565 500 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 484 IPR044965 GO:0004553|GO:0005975
Lja6g0565 500 Gene3D - 355 447 - -
Lja6g0565 500 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Lja6g0565 500 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 8 484 - -
Lja6g0565 500 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Lja6g0565 500 Gene3D Glycosidases 24 350 - -
Lja6g0565 500 Pfam Glycosyl hydrolases family 17 25 344 IPR000490 GO:0004553|GO:0005975
Lja6g0565 500 SMART X8_cls 361 446 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0565 Lja-Chr6 13564441 13567588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0565 19 498 Glycoside Hydrolase AT1G66250 71.577 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0565 K19891 - gmx:100811077 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0565 6 13564441 13567588 Lja6g0565 6 13564441 13567588 ECH
Lja3g0773 3 7828177 7828946 Lja6g0565 6 13564441 13567588 ECH
Lja6g0565 6 13564441 13567588 Lja6g0565 6 13564441 13567588 PCT