Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0546 ATGAAAATCTTAGAGGCAAATGCTGGTGCGCTCACAAATTTTGAGGTCCTTGATTTCTTACGAGGAAAAGGTGCCTCAAAAGATCCAACACGGGTTATTGCCAAAGTAGCACAGTCCGAATACAAGGTTTATGATTATTTGGTTAATACTGCTGCATCTAATCAAACAAGGGAGAGCATCAATGAGTTCATGGCAAGCGTTAAAAAGCATGACCTGGCAAAAGCTGAGGTTCTTAATATAATAAACATCAGGCCAGCTGCTGCTGTTGAAATGTTCCCTATCATAGAGGAGTGTGAGTCCCGTTTTCCAGATGAAGAAGTCACTGAAATAGTAGAGCTGGTGAAGAAAACATTGCCAGCCCCACCTGCCAAAAAGAATGTGGTGGAAAACCCTGAGGGCAATGAAGAAACGGCAACACTAGAACATGAAAATGATACCAAGATGAGTGAAGACCAAAATGAAGGTGGAGAACAAATGGACACAGATTGA 489 0.4192 MKILEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNIINIRPAAAVEMFPIIEECESRFPDEEVTEIVELVKKTLPAPPAKKNVVENPEGNEETATLEHENDTKMSEDQNEGGEQMDTD* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0546 162 SMART rpol4neu2 1 121 IPR006590 -
Lja6g0546 162 PANTHER CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN 1 139 IPR038846 GO:0005666|GO:0006384
Lja6g0546 162 SUPERFAMILY HRDC-like 4 119 IPR010997 GO:0000166|GO:0044237
Lja6g0546 162 MobiDBLite consensus disorder prediction 129 154 - -
Lja6g0546 162 MobiDBLite consensus disorder prediction 121 162 - -
Lja6g0546 162 Gene3D - 1 119 IPR038324 -
Lja6g0546 162 Pfam RNA polymerase Rpb4 10 117 IPR005574 GO:0006352|GO:0030880
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0546 Lja-Chr6 13013600 13016656 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0546 K25304 - gmx:100526847 230.335