Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0543 ATGGCTGATGATCCACAAGATGTAGCTGACAGGGAGCGCATTTTCAAGCGATTTGATGCCAATGGCGACGGCAAAATCTCTTCACAGGAGCTTGGTGAAGCTCTTAAAGCACTTGGATCAGTTACCGCTGAGGAAGTGCAACGGATGATGGCTGAAATTGACACAGATGGGGATGGCTTCATTTCATATGAAGAGTTTATAGATTTTGCTAAAGCTAACCGTGGCCTGGTGAAGGATGTGGCCAAGATTTTTTAA 255 0.451 MADDPQDVADRERIFKRFDANGDGKISSQELGEALKALGSVTAEEVQRMMAEIDTDGDGFISYEEFIDFAKANRGLVKDVAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0543 84 PRINTS Recoverin family signature 14 35 - -
Lja6g0543 84 PRINTS Recoverin family signature 59 77 - -
Lja6g0543 84 Pfam EF-hand domain pair 13 70 IPR002048 GO:0005509
Lja6g0543 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Lja6g0543 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Lja6g0543 84 PANTHER TROPONIN 1 84 - -
Lja6g0543 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Lja6g0543 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Lja6g0543 84 SMART efh_1 45 73 IPR002048 GO:0005509
Lja6g0543 84 SMART efh_1 10 38 IPR002048 GO:0005509
Lja6g0543 84 CDD EFh 12 71 IPR002048 GO:0005509
Lja6g0543 84 Gene3D - 2 84 - -
Lja6g0543 84 SUPERFAMILY EF-hand 9 70 IPR011992 -
Lja6g0543 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0543 Lja-Chr6 12959604 12959858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0543 4 84 EF-hand Containing Proteins AT3G03430 75.309 4.08e-41 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0543 K13448 - csv:101214153 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0543 6 12959604 12959858 Lja6g0543 6 12959604 12959858 PCT