Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0541 ATGCCACTCTCCGCAACACCACCGCCACCAAAAACCCTGTCACCAAAAACCCAAACCCTCTTCGAGATCATCTCCACCACCCCCTCCGTCGCCGTCGAGAAAGCCCTAGAAGATTCCGGCATCAGGGTCACCCAAAACGATGTCGAAGACGTCCTCAAGCTCTCCTACGACATCCCCTCGCATGCCGTCAAGTTCTTCCGGTGGGCCGGCCACCGCCTCCTCCATGACCACACCCCCTACTCCTGGAACCTCGTCGTCGATGTCCTCGGCAAGAATCTCCTCTTCGACGCAATGTGGGACGCCATCAACTCCATGGCCAAGCGCCCTGGGCTCATCTCGCTAGCCACATTTGCCTCCGTGTTTGGCAGCTATGTCGCGGCGGGGCTCCCCGGGGATGCTATCTCCACCTTCGAGGTGATGGAGAATTACCGGTGCGTGAGGGATGTCGTGGCGTTGAACACGCTCATGAGTGCTGTGTGCAGTGGTGGGAAAACCCTAGAGGCTTATGACTATTTGCAGGATGTGAAGAAGGAAATTAGGCCTGATGGTGACACCTATGCCATTTTGATGGAAGGGTGGGAGAGGGAAGGGAATGCTGTTGGTGCTAAAGAGACTTTTGCTGAGATGGTGATTGAGAGTGGTTGGGACCCTACCAATGAGCCTGCTTATGATTCATTTTTGTGTACTTTGATTAAGGGGCCTGATGGGATTCGCGAGGCTGTTAAGTTCTTCGATTCCATGAGAGATCGAAGGTGTTACCCGGGGTTGAGGTTCTACAAGGCTGCACTTGAGCAGTGTGTGAAGGATCATGATGTGAGGATGGCTGAGTTCTTTTGGGAGGTTATGTTGGGGAGGAAGACGACCTTGCAGCCGACAACTTCGATGTACAATTCCATGCTCGCCTTGTATTTCTATCACAATGATCTTGAAACAGCTAGGAAGATGATGGATGACATGGTTTATCGAGGGGCTTTCCCGGATTCGCTGACTTATAACTTGATGTTTCGGTTCTTGATCAAGGGCAGGAAATTGAGGGATGCCAGCAGGGTGTTCAGTGAGATGGTGAAGAATGAGTGTGTGCCGGACCAGCCTAACTGTGACGCCGCTATTAGGATTTACTTGGATAACAGGGATGCCTTCATGGCGATGAAAGTTTGGAAGTGCGAGGTGGAGCATTACCGGAGGGATTTAGAGGATACCGCGAATTTACTGGTTGTAGGGCTTAGGGATCTTGATAGGGTCCCGGAAGCGGTTAAGTATGCTGAGGATATGATTGGCAGAGGGATCAAGCTAACCTCTTCCACATTGTCTAAGTTGAAACACAGGCTTGTCAAAGGAAGAAAAGAATTTTTGTATGAAGAGCTTTTGAGAAAGTGGAAATCGCATTAG 1389 0.5097 MPLSATPPPPKTLSPKTQTLFEIISTTPSVAVEKALEDSGIRVTQNDVEDVLKLSYDIPSHAVKFFRWAGHRLLHDHTPYSWNLVVDVLGKNLLFDAMWDAINSMAKRPGLISLATFASVFGSYVAAGLPGDAISTFEVMENYRCVRDVVALNTLMSAVCSGGKTLEAYDYLQDVKKEIRPDGDTYAILMEGWEREGNAVGAKETFAEMVIESGWDPTNEPAYDSFLCTLIKGPDGIREAVKFFDSMRDRRCYPGLRFYKAALEQCVKDHDVRMAEFFWEVMLGRKTTLQPTTSMYNSMLALYFYHNDLETARKMMDDMVYRGAFPDSLTYNLMFRFLIKGRKLRDASRVFSEMVKNECVPDQPNCDAAIRIYLDNRDAFMAMKVWKCEVEHYRRDLEDTANLLVVGLRDLDRVPEAVKYAEDMIGRGIKLTSSTLSKLKHRLVKGRKEFLYEELLRKWKSH* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0541 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Lja6g0541 462 TIGRFAM PPR: pentatricopeptide repeat domain 295 327 IPR002885 -
Lja6g0541 462 TIGRFAM PPR: pentatricopeptide repeat domain 330 362 IPR002885 -
Lja6g0541 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lja6g0541 462 Gene3D Tetratricopeptide repeat domain 339 462 IPR011990 GO:0005515
Lja6g0541 462 Gene3D Tetratricopeptide repeat domain 231 338 IPR011990 GO:0005515
Lja6g0541 462 Pfam PPR repeat 150 177 IPR002885 -
Lja6g0541 462 Gene3D Tetratricopeptide repeat domain 55 230 IPR011990 GO:0005515
Lja6g0541 462 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 13 461 - -
Lja6g0541 462 PANTHER OS02G0711100 PROTEIN 13 461 - -
Lja6g0541 462 Pfam PPR repeat family 291 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0541 Lja-Chr6 12942449 12946448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0541 65 437 Miscellaneous Gene Families AT4G11690 22.622 2.31e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0541 - - aip:107633752 635.18