Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0540 ATGGAGTCCTCTCAGGTGAAGCAGAACGAGGCGGTTCCTGCCCTCTCAACCCAATCACCTCTACCTCCACCACCTCCCAATTCACGGGCCACCCCACACCACCAACCAACACCACCATCTTCTGCTTGTGCCCCTGCTTATCATCAATGTACTTGCGGTTTCGTCCACCACTTCTCGCCAAACATCACCCTCTCTGCGCTCACCCAGCAAGATGCACCATCACCTACAGCTACTGCTGCTGCTCCTGCTCTTTCTGGTGTGGTCCCTCCTCATGAATGTATTTTCAGTGGCGGCCACCGTCCAACAATCACCACTCCCTCTCTGGCCAGCCCTCACCATCCACCACCATCAGCTGCTACTGTTCCTCCTGCTGCTGCTGCTACTGCCACCCCACACCATGAACCATCATCTACTATTCTTGCTCTTCCTGCAGACACCCCTTATCATGAACCATCACCTTCTTCTGCCATTGCTCCTACTCTTGCTGTGTCCACCCTTCAGCCTGCACCATCATCCACAACTGCTACTTCTTCTCTATGTTTTTCTATGCTGAAGTACAAGAGTAGGTTGAATATGCTTGTCCAGAAGTTAGACATCTCAGATCCTAAATTTGATACTGTTTGTGAGGGACCTGCACATGCTCCAAAGTTTAAATCAAGCGTGTGGGTAGATAATACTTGGTTCAAATCACAAACCACTTTCTCTAAGCGGAAAGATGCTGAGGAAGATGTCTCCAAAGTCGCTTTAGAAGAACTGCATGCAAGATTACATGCTCAGCAAGAAGTCTCTAAAGATAAGGATGATGGACGCTCTCTTATTTTAGAGAAGAGTCGACTTTCAAAAGCTATCTTGTATGAGTATACTCTTAAAATGAAGGTAGAAAAGCCTACTTACCATACTATTAGGCAAGAAGTTTTGCGTGGCCGTTTTATATCATCTGTAGTTGTCAATGGTATGAGCTATAAGGGTGAAGCCAATAAAAATAAGAAAGATGCCGAGCAGTCAGCAGCATGTGCTGCCATTCTTAAAATCCTAGGTGGGTCTACTTCAGGAATACTCTCTGAGATATTGGAGTCAAGATCTATTGATTTTGCTGCACCCGAGCGAGACACTTCACAAAGTGTTGAGGCTACTGCTCCTGTTTCTGTCATAGCAAATGGCAGTGAAACAGATAGTGAAATTCCTGCACCTTCTCATATGCCTTCCTCAGCTGGAGAATTTCAGATGCCTGAACATGAATCATCCATTGGAGCCTCCATGCCACAAAACATGTCTCTCCAATCCGGCCAAGAGCAGTCTATTGGTGATGGTTCAACTTCGAGAAAGAGGCAAAGGACTGTAGGTCATCAAGTTGCTTATGGAAGTGCAACAAATGATGAACTTCCTCCGCCATCTTAA 1398 0.4642 MESSQVKQNEAVPALSTQSPLPPPPPNSRATPHHQPTPPSSACAPAYHQCTCGFVHHFSPNITLSALTQQDAPSPTATAAAPALSGVVPPHECIFSGGHRPTITTPSLASPHHPPPSAATVPPAAAATATPHHEPSSTILALPADTPYHEPSPSSAIAPTLAVSTLQPAPSSTTATSSLCFSMLKYKSRLNMLVQKLDISDPKFDTVCEGPAHAPKFKSSVWVDNTWFKSQTTFSKRKDAEEDVSKVALEELHARLHAQQEVSKDKDDGRSLILEKSRLSKAILYEYTLKMKVEKPTYHTIRQEVLRGRFISSVVVNGMSYKGEANKNKKDAEQSAACAAILKILGGSTSGILSEILESRSIDFAAPERDTSQSVEATAPVSVIANGSETDSEIPAPSHMPSSAGEFQMPEHESSIGASMPQNMSLQSGQEQSIGDGSTSRKRQRTVGHQVAYGSATNDELPPPS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0540 465 Gene3D - 183 252 - -
Lja6g0540 465 MobiDBLite consensus disorder prediction 1 42 - -
Lja6g0540 465 MobiDBLite consensus disorder prediction 1 16 - -
Lja6g0540 465 Pfam Double-stranded RNA binding motif 281 343 IPR014720 -
Lja6g0540 465 Pfam Double-stranded RNA binding motif 186 252 IPR014720 -
Lja6g0540 465 MobiDBLite consensus disorder prediction 388 465 - -
Lja6g0540 465 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 185 254 IPR014720 -
Lja6g0540 465 SMART DRBM_3 186 253 IPR014720 -
Lja6g0540 465 SMART DRBM_3 280 345 IPR014720 -
Lja6g0540 465 SUPERFAMILY dsRNA-binding domain-like 183 253 - -
Lja6g0540 465 PANTHER RIBONUCLEASE III 184 446 IPR011907 GO:0003723|GO:0004525|GO:0006364
Lja6g0540 465 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 279 346 IPR014720 -
Lja6g0540 465 SUPERFAMILY dsRNA-binding domain-like 280 344 - -
Lja6g0540 465 MobiDBLite consensus disorder prediction 17 33 - -
Lja6g0540 465 MobiDBLite consensus disorder prediction 97 155 - -
Lja6g0540 465 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 184 446 - -
Lja6g0540 465 MobiDBLite consensus disorder prediction 415 453 - -
Lja6g0540 465 Gene3D - 259 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0540 Lja-Chr6 12930501 12933851 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0540 - - aprc:113846998 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0540 6 12930501 12933851 Lja6g0540 6 12930501 12933851 PCT