Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0518 ATGGAGTCACCACAAGCAAAAAAAACTGGGTTGAACCTGCCATCTACAATGTCAGGGACATCACTACGCCTCGAAACATTCTCTGCATCATCTTCATTCCGATCAATCTCGAACCTGTCACCATCAAAGCCTTCAACAACCAGTGACAGGTTCATCCCGTGTAGATCGTCTTCGAGGCTGCACACATTCGGCCTCATTGACAAACCCTCGCCGGTGAAAGAAGGGAGTAACGAGGCTTATTCCAGGTTGTTGAAGTCTGAGATTTTTGGTTCTGATTTTGCTTCTCCTTCTCCTTCTTCTCCTGCAGGTAACTCTGGTTCTCCGATGAGTAGTCCCAGCAAGAATATGTTGCGGTTTAAGACGGATCATTCTGGACCTTCCTCGCCGTTTTCGCCTTCGATTCTTGGTCACCATTCTGGGTTCTCTTCTGAGTCTTCAACGCCGCCTAAGCCTCCGAGGAAAGTTCCCAAGACACCCCACAAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCCTCACAGAATGTTCTAGCTGTGGGGCTTGGAACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAGAGTGACTAAGCTTTGTGACTTGGGGCCTTATGATGGTGTTTGTTCTGTCCAGTGGACCAAAGAGGGTTCTTTTATTTCGGTCGGTACATCGCTTGGTCAAGTTCAGGTTTGGGATGGAACTCAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAGACAAGAACGGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGCAGGGACAGGAACATCCTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTGGAAAACTAGTTGGCCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGATAGGGAACTTGCTTCTGGTGGTAATGATAACCAGCTTTTGGTATGGAATCAGCACTCTCAACAACCAGCTCTGAGACTTACAGAACACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAGAGCAACCTCCTTGTGTCTGGTGGTGGAACTGCCGATAGGTGTATTCGTTTCTGGAACACTACAAATGGCCATCAATTGAACCATGTTGACACTGGGAGCCAGGTGTGCAACCTTGCTTGGAGTAAAAATGTGAATGAGATAGTAAGTACTCATGGGTACTCCCAAAATCAGATTATGGTGTGGAAATATCCATCACTATCAAAGGTTGCAACTCTAACTGGCCATAGCATGCGAGTGCTGTACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGGGATGAGACTCTGCGGTTCTGGAATGTTTTTCCATCAATGAAAACACCTGCCCCAGTTAAAGACACTGGCCTTTGGTCACTGGGACGCACCCAAATTCGATGA 1437 0.4725 MESPQAKKTGLNLPSTMSGTSLRLETFSASSSFRSISNLSPSKPSTTSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNEAYSRLLKSEIFGSDFASPSPSSPAGNSGSPMSSPSKNMLRFKTDHSGPSSPFSPSILGHHSGFSSESSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSRVTKLCDLGPYDGVCSVQWTKEGSFISVGTSLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFVGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0518 478 ProSitePatterns Trp-Asp (WD) repeats signature. 355 369 IPR019775 -
Lja6g0518 478 Pfam Eukaryotic translation initiation factor eIF2A 317 451 IPR013979 -
Lja6g0518 478 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g0518 478 SUPERFAMILY WD40 repeat-like 154 454 IPR036322 GO:0005515
Lja6g0518 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 377 IPR001680 GO:0005515
Lja6g0518 478 MobiDBLite consensus disorder prediction 30 53 - -
Lja6g0518 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Lja6g0518 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 332 IPR001680 GO:0005515
Lja6g0518 478 MobiDBLite consensus disorder prediction 93 162 - -
Lja6g0518 478 Gene3D - 114 455 IPR015943 GO:0005515
Lja6g0518 478 MobiDBLite consensus disorder prediction 93 148 - -
Lja6g0518 478 PANTHER PROTEIN FIZZY-RELATED 3 9 478 - -
Lja6g0518 478 SMART WD40_4 414 453 IPR001680 GO:0005515
Lja6g0518 478 SMART WD40_4 156 197 IPR001680 GO:0005515
Lja6g0518 478 SMART WD40_4 284 323 IPR001680 GO:0005515
Lja6g0518 478 SMART WD40_4 326 368 IPR001680 GO:0005515
Lja6g0518 478 SMART WD40_4 199 240 IPR001680 GO:0005515
Lja6g0518 478 SMART WD40_4 243 280 IPR001680 GO:0005515
Lja6g0518 478 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 478 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lja6g0518 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 454 - -
Lja6g0518 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 454 IPR001680 GO:0005515
Lja6g0518 478 ProSitePatterns Trp-Asp (WD) repeats signature. 440 454 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0518 Lja-Chr6 12493637 12496316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0518 290 454 Miscellaneous Gene Families AT5G08390 21.084 3.15e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0518 K03364 - gmx:547741 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0518 6 12493637 12496316 Lja6g0518 6 12493637 12496316 ECH