Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0517 ATGCCTTTCATCTCCAAAATTCAGCGCCAAACCGATTACCATCTCTTCAGTTCCACCACTCCCATCGTCATCGACAATGGCGCTTCCTATTTCCGTATTGGGTGGGCAGGAGAGACTGAACCCCGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCATAAAGCCACTGGAGAAACTGTCACTATTGTTGGTGATCATGATCCAGCTTTACTGAAATACTTTGACTGCACTCGCTCTGGACCTCGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATTATGGAATATATTCTGGACTTTGCATTTGACCGGATGGGTGCAACAGGATCAAAGATTGATCATCCTGTACTGATCACAGAATGTGTGTGCAACCCAGTTCAGTCTCGTAGTAAAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGGGTTGATGCAGCATTCAGCTATAAATATAATCAGCAACAAGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCACTACAACCCATGTGATTCCGTTTGTAGAAGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTTAAGCAACTGCTTTCACTTAAATATCCTTATCATATGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACAGGACTATGCATCTGAAGCTCGATTGTTTCAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGCTGGCAGCTCCCCTGGGTTCCACCGCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCGCGGTTTGGAATTTCTTTTAAATCAACTTGACCATGTTGAAGAAAGTGGTGTTCCAGCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAATAGAATCTGCCCGTAATAAAGTTGTGCAATCCTTGCGGAAAACAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAAAAGGCTGACTCCAGCAATAATGAGAAGTATACTCTTATAAACATTCCTGATGACATGCTGACCCCAGAGCAGCTCATCGAAAAGAAGAAACAGTTATCACTCAAATCCATGTCTGACGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAACTCGAAAGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCTAGAAAACCCGGAGCTTTACTTGGAACAATTACATGCTAGATACAAAGACCTTTCAGAGAGAGTTGACCAAAGAAAACGACTCAAGACAAATGGTGGCAATACAAATGGAAATAGTTTATCCGGTGGTGTTGGTCGTGGTGAGAGACTGAATGCTGCCCAAAGGGAGAGGATGCGGCTCCTAACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAGAGATAATGATGATGATGACGAGGGACCAGATGAGGATGACACAGAGCTAGCTCGCATCTCTTCGAGGCTCCAGGACTTAGATCCAACATTTGTACCCAAGGTGGAAACCAGTAGCTCCCAACCTGCTGAGGCTCAACGTCCTCGTCCTCTTAGTAAAGAAGATTTTCAGATTGTTTTTGGGGTTGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCAGGCAGGACTAGACGAAATGGCCGGGGTCTCATTAAGAAGGTTATCATATAAGGATGAAATACTGGAAGAGAGACTGACTAGTTCGATACTCGTGACTGGTGGAAGTTCTCTTTACCCTGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATTAGACCCTGCGGATCGCGTATAAAAATAGTTAGAGCTCTGGATCCAGTTATGGATGCATGGCGTGGGGCTTCTGCTTATGCATCAAACCCAGGATTCCATACACAAACTTTCAGTAGGGAGGACTATGATGAAAAGGGTGAAGACTGGCTTCGCGGTTATCAACTGCAATATTCGTTGTAA 2169 0.4408 MPFISKIQRQTDYHLFSSTTPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFAFDRMGATGSKIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLALCPGFTTTHVIPFVEGEPIYKGCCRTNIGGFHVTDYFKQLLSLKYPYHMARFTWEKVEDLKMEHCYIAQDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELRGLEFLLNQLDHVEESGVPAFLAETGYVSRQEIESARNKVVQSLRKTKGEPKNEQAETEKADSSNNEKYTLINIPDDMLTPEQLIEKKKQLSLKSMSDGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHARYKDLSERVDQRKRLKTNGGNTNGNSLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEGPDEDDTELARISSRLQDLDPTFVPKVETSSSQPAEAQRPRPLSKEDFQIVFGVERFRCPEILFNPNWIGVDQAGLDEMAGVSLRRLSYKDEILEERLTSSILVTGGSSLYPGIVERLEAGIRMIRPCGSRIKIVRALDPVMDAWRGASAYASNPGFHTQTFSREDYDEKGEDWLRGYQLQYSL* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0517 722 SUPERFAMILY Actin-like ATPase domain 171 714 IPR043129 -
Lja6g0517 722 Gene3D Actin; Chain A, domain 2 49 85 - -
Lja6g0517 722 Gene3D - 612 681 - -
Lja6g0517 722 MobiDBLite consensus disorder prediction 559 580 - -
Lja6g0517 722 MobiDBLite consensus disorder prediction 358 382 - -
Lja6g0517 722 Gene3D - 22 150 - -
Lja6g0517 722 Gene3D Actin; Chain A, domain 4 207 260 - -
Lja6g0517 722 Gene3D - 152 206 - -
Lja6g0517 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Lja6g0517 722 Pfam Actin 587 713 IPR004000 -
Lja6g0517 722 Pfam Actin 19 268 IPR004000 -
Lja6g0517 722 Gene3D Actin; Chain A, domain 4 541 611 - -
Lja6g0517 722 Coils Coil 419 445 - -
Lja6g0517 722 Coils Coil 449 469 - -
Lja6g0517 722 SUPERFAMILY Actin-like ATPase domain 18 159 IPR043129 -
Lja6g0517 722 PANTHER ACTIN-RELATED PROTEIN 5 16 714 IPR027664 -
Lja6g0517 722 SMART actin_3 19 718 IPR004000 -
Lja6g0517 722 MobiDBLite consensus disorder prediction 562 576 - -
Lja6g0517 722 Coils Coil 309 329 - -
Lja6g0517 722 Gene3D - 682 710 - -
Lja6g0517 722 MobiDBLite consensus disorder prediction 468 487 - -
Lja6g0517 722 PANTHER ACTIN 16 714 IPR004000 -
Lja6g0517 722 MobiDBLite consensus disorder prediction 358 380 - -
Lja6g0517 722 MobiDBLite consensus disorder prediction 406 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0517 Lja-Chr6 12480129 12490765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0517 588 709 Miscellaneous Gene Families AT2G42100 32.787 1.96e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0517 K11672 - gmx:100808396 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0517 6 12480129 12490765 Lja6g0517 6 12480129 12490765 ECH
Lja6g0517 6 12480129 12490765 Lja6g0517 6 12480129 12490765 PCT