Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0512 ATGGTTTCTTCTCTCCTTGTTCTCCTTCAATTTCAAACCCCTTTCATTATTACCCTTACCCTTTTCATCATTTTCCATCAAATCCAAACAAGTGATGCTTCACCTCAAACCCTCCTTATCTTGCCTCTAAAAGTGCAAACACACCCACATGGCTCAGTTTCCATTCCAATACCTTCTTCTCGTAAGCTCTCATTCCAGCACAATGTGACACTAACAGTTTCACTCACAGTGGGCTCACCCCCACAGAGTGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTCCACTGCAAAAAACTCCCAAATTTGAACTCTGTTTTCAACCCACAACTCTCTTCCTCTTACAACCCAACACCCTGCACCTCACCCGTTTGCAAGACCCGGACCCGAGACTTCCCCATACCCGTTTCCTGCGACCCGAAAAACCTCTGCCACGCCACGGTTTCCTACGCCGACGCTACCTCCATCGAAGGCAACCTCGCCACCGAGACGTTCTTCGTCGCTGGGTCACCGCAACCCGGAACAACCTTCGGGTGCATGGACTCCGGGTTCACCTCCAACGCCGATGAGGACTCCAAGACAACCGGGTTGATGGGTATGAACCGCGGGTCACTCTCGTTTGTTGCTCAAATGGGTTTGCCCAAATTCTCGTACTGCATCTCCGGCAGCGACTCCTCCGGCGTGTTGCTCTTCGGCGACGCAAAGTTCGCGTGGCTGGGACCATTGAGGTACACTCCCATGGTGAAAGAGTCCACCCCATTGCCGTACTTCGACCGGGTCGCGTACACGGTCCGGCTTCAGGGGATCCGGGTCGGGAAGAAGCTTCTGCAACTGGAGAAATCGATTTTCGTCCCGGACCACACCGGGTCGGGTCAGACAATGGTGGATTCGGGTACCCAGTTCACGTTTCTTCTGGGTCCGGTTTACAAGGCTTTGAGGGAAGAGTTCGTAGCGCAAACGAAAGGGGTGCTGACCCTTTTGGACGACCCGAATTTTGTCTTCCAGGGAGCCATGGATCTCTGTTACCGGGTCGGATCAAACAGGAAGAGTCTTCCTCTTCCGCCGTTGCCGGCGGTGACGTTGGTGTTTGAAGGGGCGGAGATGAGTGTTTCCGGGGAGAGGCTGTTGTATAAGGTGGGTGATGTGGCGGCGGCGAAAGGGAGTGAAGATACGGTGTATTGTTTCACGTTTGGGAACTCTGAGTTGGTGGGAATTGAAGCTTATGTGATTGGGCATCATCATCAGCAGAATGTGTGGATGGAGTTTGATTTGGTCAACTCTAGGGTTGGTTTTGCTGACACTAGGTGTGAACTTGCTAGTCAACGTCTAGGAATGGGTTCTTAG 1350 0.5259 MVSSLLVLLQFQTPFIITLTLFIIFHQIQTSDASPQTLLILPLKVQTHPHGSVSIPIPSSRKLSFQHNVTLTVSLTVGSPPQSVTMVLDTGSELSWLHCKKLPNLNSVFNPQLSSSYNPTPCTSPVCKTRTRDFPIPVSCDPKNLCHATVSYADATSIEGNLATETFFVAGSPQPGTTFGCMDSGFTSNADEDSKTTGLMGMNRGSLSFVAQMGLPKFSYCISGSDSSGVLLFGDAKFAWLGPLRYTPMVKESTPLPYFDRVAYTVRLQGIRVGKKLLQLEKSIFVPDHTGSGQTMVDSGTQFTFLLGPVYKALREEFVAQTKGVLTLLDDPNFVFQGAMDLCYRVGSNRKSLPLPPLPAVTLVFEGAEMSVSGERLLYKVGDVAAAKGSEDTVYCFTFGNSELVGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRCELASQRLGMGS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0512 449 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 86 97 IPR001969 GO:0004190|GO:0006508
Lja6g0512 449 CDD pepsin_A_like_plant 70 438 IPR034161 -
Lja6g0512 449 Gene3D Acid Proteases 50 235 IPR021109 -
Lja6g0512 449 ProSiteProfiles Peptidase family A1 domain profile. 71 434 IPR033121 -
Lja6g0512 449 SUPERFAMILY Acid proteases 72 438 IPR021109 -
Lja6g0512 449 Gene3D Acid Proteases 241 443 IPR021109 -
Lja6g0512 449 PANTHER ASPARTYL PROTEASE-RELATED 15 447 IPR001461 GO:0004190|GO:0006508
Lja6g0512 449 Pfam Xylanase inhibitor C-terminal 263 434 IPR032799 -
Lja6g0512 449 Pfam Xylanase inhibitor N-terminal 73 235 IPR032861 -
Lja6g0512 449 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 15 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0512 Lja-Chr6 12245567 12247947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0512 72 439 Miscellaneous Gene Families AT1G44130 24.190 1.24e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0512 - - gmx:100783835 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0512 6 12245567 12247947 Lja6g0512 6 12245567 12247947 ECH