Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0506 ATGGCTCCTTCTTTCCATCACTTCGTTTTCCTCTCCATTCTAGTCTCCATCTCACTAACCAATGGAACACAGCTTATAATAGTGAACAACTGCAAAGAGAGTGTGTGGCCTGGAATTCTTGGCAATGCAGGGCTCCCTTCTCCGAAAGACGGCGGTTTTCACCTCGCGAGCGGCGAAGAGGTTGTTCTCCAAGTCCCTGAGGGCTGGGCAGGGAGAATCTGGGGCAGACAAGGGTGCTGCTTTGATGAACAAACAGGAAAAGGCTCTTGCCAAACAGGAGATTGTGGAGGCCTCTTGAAATGCAGGGGAATTGGTGGAGTCCCCCCTGCTACCCTTGTGGAAATGACCCTTGGAACTTCTCAGTCACCGTTGCATTTCTATGATGTTAGCTTGGTTGAAGGGTTTAACCTTCCGGTGTCCATGAGGCCTGTTGGCGGCGGTGGCGGGTGCGGTGTTGCGGCGTGTGAGGAAGACTTGAATGTTTGTTGCCCTGCTTCACTGATTGTGGAGAGGCAGGGGAAGGTGGTGGGGTGCAAGAGTGCTTGTTTAGCTGCAAGATCAGATAGGTATTGCTGCACTGGGGAGTTTGCTAACCCAAAAACCTGCAAGCCAACAGTGTTTTCTCGTCTCTTCAAGACTGTTTGCCCTCATGCTTATAGCTACCCTTATGATGATGCAGCAGGGCTTAAGACTTGTAACAAGGCATCTCGTTATGTCATCACATTTTGCCCTCCACAATGA 741 0.5061 MAPSFHHFVFLSILVSISLTNGTQLIIVNNCKESVWPGILGNAGLPSPKDGGFHLASGEEVVLQVPEGWAGRIWGRQGCCFDEQTGKGSCQTGDCGGLLKCRGIGGVPPATLVEMTLGTSQSPLHFYDVSLVEGFNLPVSMRPVGGGGGCGVAACEEDLNVCCPASLIVERQGKVVGCKSACLAARSDRYCCTGEFANPKTCKPTVFSRLFKTVCPHAYSYPYDDAAGLKTCNKASRYVITFCPPQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0506 246 SMART tha2 25 244 IPR001938 -
Lja6g0506 246 PANTHER OS03G0233200 PROTEIN 4 246 IPR001938 -
Lja6g0506 246 Pfam Thaumatin family 29 244 IPR001938 -
Lja6g0506 246 Gene3D Thaumatin 24 244 IPR037176 -
Lja6g0506 246 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Lja6g0506 246 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Lja6g0506 246 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Lja6g0506 246 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lja6g0506 246 ProSiteProfiles Thaumatin family profile. 25 244 IPR001938 -
Lja6g0506 246 PIRSF PR5 2 246 IPR001938 -
Lja6g0506 246 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 4 246 - -
Lja6g0506 246 CDD TLP-PA 24 243 - -
Lja6g0506 246 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Lja6g0506 246 SUPERFAMILY Osmotin, thaumatin-like protein 24 245 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0506 Lja-Chr6 12170523 12171723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0506 10 244 Receptor kinase-like Gene Family AT5G38280 39.754 2.38e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0506 - - gmx:100809093 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0506 6 12170523 12171723 Lja6g0506 6 12170523 12171723 ECH