Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0501 ATGGCGGCTGCCACTGAAATTGGGGTGTCTGAATTTCTACAGGGTACCTGCAGGCAAACTTTACTTCTGTTGAAGAAGCCTCAGATACAGAGAACTCATTTACTTTGGGGTGCTGCTTGTAGTAGGGGTCAGGTTCCGGTTTCGGCTCGAAAAGGTTTGTCTTTGAGGTGCCAAGCTCAAGAGAATCCTAGAGCTGTGGTTTCTAGCAATGTTGGAGTGGAGTCTGGATTGGTTCAGAAGCCTGGTTTGGAGGTTTTTCATTTGTTCCGTGTTCCGTGTATGGAAGACAGTGCAGCGGCTGAGCTTCTTAAGGAGGCTCAAACTAAAATCTCTGATCAGATAGTGGGAATGAAGACAGAGCAGTGTTTCAACATTGGCCTTACTTCGCAGCTTTCAAGCAGAAAACTTTCTGTCCTTCAATGGCTTCTGCGAGAAACGTTTGAGCCGGAGAATCTGGGAACTGAGAGCTTTCTTGAGGAGAAGAGGACGGAGGATTGTAGCGCAATTGTAGTAGAGGTTGGGCCGAGGTTATCGTTTACCACAGCGTGGTCTGCTAATGCTGTGTCTATTTGCCAAGCCTGTGGTTTGACGGAAGTGAACCGTTTGGAACGGTCGAGGAGGTACTTGTTGTACACGAACGGTGAATTGCAAGACAGTCAAATTAATGAATTTGCATCCATGGTACATGATAGGATGACTGAATGTGTTTATACTCAGAAGCTAACATCCTTTGAGACCAATTTAGTTCCTGAGGAAATTCGTTATATACCTGTCATGGAGAGAGGACGAAAGGCCTTAGAAGAGATTAATCTGGAGATGGGTTTCGCCTTTGATGAACAGGATTTAGAATATTATACCAAGCTTTTCATGGAAGACTTCAAGCGTAATCCAACAAATGTTGAACTGTTTGATATTGCGCAGTCAAACAGTGAGCATAGCAGGCACTGGTTTTTTACTGGAAAGATTGTCATTGATGGGAAGGTAATGGATAGGACTCTGATGCAAATTGTGAAAAGTACTTTACAGGCCAATCCAAATAACTCTGTCATTGGATTTAAGGATAACTCAAGTGCAATCAGAGGTTTCCAAGTAAACCCGCTGCGACCAGTTCAGCCCGGTACCTCATGTCCGTTAGATGTGATAGCAAGGGAGTTAGATATCTTATTCACAGCTGAAACACACAACTTTCCATGTGCTGTGGCACCATATCCTGGTGCTGAGACAGGTGCAGGAGGTCGCATTAGGGATACACATGCAACAGGAAGGGGGTCCTTTGTCCAGGCAGCTACTGCTGGTTATTGTGTTGGGAATCTCAACACGCCAGGATTATATGCCCCTTGGGAAGACCTATCATTTACTTATCCATCAAATTTGGCATCACCTTTGCAGATTCTTATAGATGCCAGTAATGGTGCATCTGACTATGGGAACAAATTTGGAGAGCCCTTGATCCAGGGCTACTGCAGAACTTTTGGAATGAGACTTCCTAGTGGGGAGAGGCGCGAATGGTTGAAGCCGATCATGTTTAGTGCAGGCATTGGGCAGATTGACCACCATCATATATCAAAGGGGGAGCCTGACATTGGAATGCTGGTTGTTAAAATTGGAGGCCCTGCTTATCGTATTGGGATGGGAGGCGGGGCAGCCTCTAGCATGGTCAGTGGGCAGAATGATGCAGAGCTTGATTTCAATGCTGTACAACGTGGGGATGCTGAGATGGCACAAAAATTGTATCGTCTTGTTCGTGCCTGTATTGAGATGGGGGATAAAAATCCAATTATCAGCATTCATGATCAGGGTGCTGGTGGGAACTGTAATGTTGTAAAGGAAATTATATATCCAAAAGGTGCTGAGATAGATGTCCGAAAAGTAAAGGTTGGTGATTATACAATGTCTGTTTTAGAAATTTGGGGTGCAGAGTATCAGGAGCAAGATGCAATATTGGTGAAGCCAGAAAGTCATGAGCTCTTAAAGTCAATCAGTAATAGGGAAAAGGTTTCAATGGCTGTGATTGGAACTATCAGTGGTGATGGGCGTGTCGTGTTAGTTGATAGCTTAGCAACTCAAAAGAATCTCTCAAATGGGCTCCCTCCACCTCCCCCGGCTGTGGATTTTGAATTGGAGAAGGTCCTTGGTGACATGCCTCAGAAATCTTTTGAATTTAATCGGGTTGTTTATGAGCAGGAGCCTCTAGATATTGCCCCTGGGATCACAGTAATAGATTCTCTCAAGAGGGTTCTGAGTTTACCATCCGTCTGCTCAAAACGCTTCTTAACAACAAAAGTTGATAGGTGTGTCACTGGTCTAGTGGCTCAGCAGCAGACTGTTGGCCCTTTGCAGATTCCCCTTGCTGATGTTGCTGTTACGGCTCAGACTTTTACAGATTTAACAGGAGGTGCATGCGCCATTGGGGAGCAACCAATCAAAGGTCTGTTAGACCCCAAAGCAATGGCCCGGTTGGCTGTTGGAGAAGCCCTCACAAACCTTGTATGGGCAAAGGTAACTTCCCTTTCTGATGTCAAGGCTAGTGGTAATTGGATGTATGCTGCCAAGCTTGATGGGGAAGGAGCTGCCATGTATGATGCTGCCATATCTTTGTCTGAAGCAATGATTGAACTTGGTATTGCTATTGATGGAGGGAAAGACAGTCTTTCTATGGCAGCCCACTCTGGAAGTGAAGTTGTCAAGGCGCCTGGAAATCTTGTTATTAGTGTTTATGTTACTTGTCCTGATATAACTAAAACAGTGACACCAGATTTAAAACTTGGTGATGATGGTATCCTGCTTCATATTGATTTGTCTAAGGGGAAGCGGCGTTTAGGTGGATCTGCTCTTGCCCAGGCATTTGACCAAGTTGGGAATGAGTGTCCTGATGTTGATGATATTCCTTACCTTAAAAAGGTCTTTGAAGGTGTTCAAGAGCTTCTTACCGATGATCTGATCTCTGCTGGTCATGACATTAGTGATGGTGGGCTTCTTGTTTGTGCCTTAGAGATGGCATTTGCTGGTAATCGTGGACTTGTTTTAGACTTGGCTTCACGAGGTAACAGTCTTTTTCAAACACTCTATGCAGAAGAGCTTGGGTTAGTTCTTGAGGTAAGCAAGAAAAATCTGGCTTCTGTTATGGATAAACTGAACAGTGTGGGAGTTGTGGCTGAGATCATTGGTCAAGTAACTGCCACTCCATCAATAGAAGTTAAGGTTGATGGGGAGACTTGTTTAACAGAAAAAACTAGCATCCTCAGGGACATGTGGGAAGAAACCAGTTTTCAGTTGGAGAAGTTCCAAAGATTAGCATCATGCGTGGATATGGAGAGAGAAGGTCTAAAACATCGTCATGAGCCCTCATGGGAACTTTCCTTTACTCCTTCCTTCACTGATGAAAAGTATTTGTCTGCAAATGCAAAACCTAAAGTGGCTGTGATTAGAGAAGAAGGGAGCAATGGAGACAGAGAAATGGCTGCAGCGTTTCACGCAGCAGGTTTTGAACCATGGGATGTTACTATGACCGACCTTCTTAATGGAGTGATCTCTTTGCAAGAGTTTCGCGGAATTGTATTTGTTGGTGGATTTAGCTATGCTGACGTGCTTGATTCTGCAAAAGGTTGGTCTGCTTCCATAAGGTTCAATGAGCCCCTTTTGAAACAATTTCAGGAGTTTTACAACCGTCCAGAAACGTTCAGTCTTGGTGTATGCAATGGCTGTCAGCTTATGGCTTTGTTAGGATGGGTACCAGGGCCACAAGTTGGAGGTGTGCTTGGTGATGGTGGCGACCTATCACAGCCTAGATTCATTCACAACGAGTCGGGGCGGTTTGAATGCCGCTTTACAAGTGTGACAATAAAGGACTCACCAGCTATAATGTTCAAAGGTATGGAGGGTAGCACATTGGGGATATGGACTGCTCATGGGGAGGGACGAGCTTATTTCCCGGATAAAGGTGTGTTTGAACGCGTGGCTCATTCAGAGTTAGCTCCTCTAAGATATTGTGATGATGCTGGCAATCCGACCGAGGGGTACCCTTTCAATGTGAATGGCTCTCCTTTAGGCATTGCAGCTATTTGTTCTCCGGATGGGAGGCATCTTGCCATGATGCCTCATCCGGAGCGTTGCTTCTTAATGTGGCAGTTCCCATGGTACCCAAAGCAGTGGGATGTGGAAAAGAAGGGGCCTAGTCCTTGGCTGCGGATGTTCCAGAATGCAAGAGAGTGGTGTACTTGA 4221 0.452 MAAATEIGVSEFLQGTCRQTLLLLKKPQIQRTHLLWGAACSRGQVPVSARKGLSLRCQAQENPRAVVSSNVGVESGLVQKPGLEVFHLFRVPCMEDSAAAELLKEAQTKISDQIVGMKTEQCFNIGLTSQLSSRKLSVLQWLLRETFEPENLGTESFLEEKRTEDCSAIVVEVGPRLSFTTAWSANAVSICQACGLTEVNRLERSRRYLLYTNGELQDSQINEFASMVHDRMTECVYTQKLTSFETNLVPEEIRYIPVMERGRKALEEINLEMGFAFDEQDLEYYTKLFMEDFKRNPTNVELFDIAQSNSEHSRHWFFTGKIVIDGKVMDRTLMQIVKSTLQANPNNSVIGFKDNSSAIRGFQVNPLRPVQPGTSCPLDVIARELDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVQAATAGYCVGNLNTPGLYAPWEDLSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYCRTFGMRLPSGERREWLKPIMFSAGIGQIDHHHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRLVRACIEMGDKNPIISIHDQGAGGNCNVVKEIIYPKGAEIDVRKVKVGDYTMSVLEIWGAEYQEQDAILVKPESHELLKSISNREKVSMAVIGTISGDGRVVLVDSLATQKNLSNGLPPPPPAVDFELEKVLGDMPQKSFEFNRVVYEQEPLDIAPGITVIDSLKRVLSLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLADVAVTAQTFTDLTGGACAIGEQPIKGLLDPKAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGAAMYDAAISLSEAMIELGIAIDGGKDSLSMAAHSGSEVVKAPGNLVISVYVTCPDITKTVTPDLKLGDDGILLHIDLSKGKRRLGGSALAQAFDQVGNECPDVDDIPYLKKVFEGVQELLTDDLISAGHDISDGGLLVCALEMAFAGNRGLVLDLASRGNSLFQTLYAEELGLVLEVSKKNLASVMDKLNSVGVVAEIIGQVTATPSIEVKVDGETCLTEKTSILRDMWEETSFQLEKFQRLASCVDMEREGLKHRHEPSWELSFTPSFTDEKYLSANAKPKVAVIREEGSNGDREMAAAFHAAGFEPWDVTMTDLLNGVISLQEFRGIVFVGGFSYADVLDSAKGWSASIRFNEPLLKQFQEFYNRPETFSLGVCNGCQLMALLGWVPGPQVGGVLGDGGDLSQPRFIHNESGRFECRFTSVTIKDSPAIMFKGMEGSTLGIWTAHGEGRAYFPDKGVFERVAHSELAPLRYCDDAGNPTEGYPFNVNGSPLGIAAICSPDGRHLAMMPHPERCFLMWQFPWYPKQWDVEKKGPSPWLRMFQNAREWCT* 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0501 1406 CDD PurL_repeat2 785 1058 - -
Lja6g0501 1406 SMART GATase_5_2 1136 1405 - -
Lja6g0501 1406 SUPERFAMILY FGAM synthase PurL, linker domain 249 316 - -
Lja6g0501 1406 Pfam Formylglycinamide ribonucleotide amidotransferase linker domain 266 315 IPR041609 -
Lja6g0501 1406 SUPERFAMILY PurM N-terminal domain-like 317 524 IPR036921 -
Lja6g0501 1406 Gene3D - 494 693 IPR036676 -
Lja6g0501 1406 SUPERFAMILY PurS-like 86 244 IPR036604 -
Lja6g0501 1406 Pfam AIR synthase related protein, C-terminal domain 939 1068 IPR010918 -
Lja6g0501 1406 Pfam AIR synthase related protein, C-terminal domain 529 682 IPR010918 -
Lja6g0501 1406 Gene3D - 334 493 IPR036921 -
Lja6g0501 1406 CDD PurL_repeat1 301 684 - -
Lja6g0501 1406 SUPERFAMILY PurM C-terminal domain-like 923 1118 IPR036676 -
Lja6g0501 1406 Gene3D Phosphoribosylformylglycinamidine synthase, linker domain 249 310 - -
Lja6g0501 1406 Pfam CobB/CobQ-like glutamine amidotransferase domain 1136 1405 - -
Lja6g0501 1406 Gene3D - 1082 1406 IPR029062 -
Lja6g0501 1406 Pfam Formylglycinamide ribonucleotide amidotransferase N-terminal 122 240 IPR040707 -
Lja6g0501 1406 CDD GATase1_FGAR_AT 1139 1402 - -
Lja6g0501 1406 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1138 1382 - -
Lja6g0501 1406 Hamap Phosphoribosylformylglycinamidine synthase [purL]. 85 1406 IPR010073 GO:0004642|GO:0006189
Lja6g0501 1406 TIGRFAM FGAM_synt: phosphoribosylformylglycinamidine synthase 90 1404 IPR010073 GO:0004642|GO:0006189
Lja6g0501 1406 Gene3D - 723 904 IPR036921 -
Lja6g0501 1406 PANTHER PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE 84 1406 - -
Lja6g0501 1406 SUPERFAMILY PurM N-terminal domain-like 736 917 IPR036921 -
Lja6g0501 1406 SUPERFAMILY PurM C-terminal domain-like 526 760 IPR036676 -
Lja6g0501 1406 PANTHER - 84 1406 - -
Lja6g0501 1406 Gene3D - 905 1081 IPR036676 -
Lja6g0501 1406 SUPERFAMILY Class I glutamine amidotransferase-like 1134 1405 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0501 Lja-Chr6 12122328 12127188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0501 K01952 - gmx:100794589 2451.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0501 6 12122328 12127188 Lja6g0501 6 12122328 12127188 ECH