Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0493 ATGGCAGAAGCTCATAATATCAGTAACAGAGGACCAAGATGGTCTCTCAATGGAATGACAGCCCTTGTCACTGGTGGCACACGTGGAATTGGGCATACCATTGTGAATGATCTAGCTGCGTTTGGCGCTGCTGTGCACACTTGTTCCAGGACAGAATCAGAGCTGACCAAGTGTTTGCAAGAATGGCAAAGTCAAGGCTTTTTGGCTACTGGGTCAGTCTGTGATGTGTCCTCTAGGCCTCAGAGAGAGAAGCTCATGCAGGAAGTGGCCTCCACCTTCAATGGCAAGCTCAAAATCTTTATAAACAATGTAGGAACAAACTTTAGAAAGCCAACAGTTGAGTACACTGCTGAAGAATATTCAGAGCTGATGACTGTTAATTTAGACTCTGCATTCCATCTGTGCCAACTTGCCCATCCTCTTCTAAAAGCATCTGGGGTGGGCAGCATCGTGTTCATTTCATCTGTTGCAGGAGTGGTGAGCTTGGGTACTGGATCTGTCTATGCAGCATGTAAAGCTGCAATTAATCAGCTTACAAAGAATCTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGCAATTGTGTTGTGCCATGGGCAACCAGAACCCCACTTGTAGAACATTTGTTTCAAAACCAAAAGTTTGTGGATGATATCATGTCTCGAACCCCTCTTAAGCGCATTGCAGAACCCGAAGAAGTGTCATCGTTGGTGGCTTTCCTTTGTTTGCCTGCTGCGTCTTACATCACTGGACAGGTTATTTGTGTTGATGGAGGACTAACAGTGCATGCCATAGTGGAAGATTTATGTGGGTTTGGTACCACTGTCCACACTTGTTCCAGAAACCAAGCAGAGCTTGATAAGTGCTTATCTGATTGGCAGAGTAAGGGCTTTTTGGTTTCTGGGTCAGTGTGTGATGTGTCATCTTTAGCTCACAGAGAGAAGCTCATTCAAGAAGTTACCTCTATCTTCAATGGCAAGCTTAATGTTTATGTGAACAATGTTGGAGCAAACTTTAGGAAGCCAACTGTTGAATACACTGCTGAGGATTATTCTGGAATGATGGCAATCAATCTAGATTCTGCATTCCATTTGTGCCAACTTGCATATCCTCTTCTGAAAGCATCTGGAATGGGAAGCATTGTGTTTATTTCTTCTATTGCTGGTGTGGTAAGCTTAGGTACTGGATCAGTCTATGCAGCAAGTAAAGCTGCAATCAATCAGCTTACCAAAAGTCTGGCTTGTGAGTGGGCAAAAGATGGCATAAGGAGCAATTGTGTAGTTCCTGCAACCACCAATACACCGCTTGTAGAACATCTGCTTCGCAACAAGAAGTATGTCGATGAAATGTTGTCTCGAACTCCTATTCGGCGCATCGCAGAAGCTCAAGAAATATCCTCCTTGGTTGCTTTCCTTTGTCTGCCTGCTGCCTCTTACATCACTGGACAGGTTATTTGTATTGATGGAGGATTAACCGTGAATGGATTTCAGCCCAGCATGAGAATAACATGA 1512 0.4418 MAEAHNISNRGPRWSLNGMTALVTGGTRGIGHTIVNDLAAFGAAVHTCSRTESELTKCLQEWQSQGFLATGSVCDVSSRPQREKLMQEVASTFNGKLKIFINNVGTNFRKPTVEYTAEEYSELMTVNLDSAFHLCQLAHPLLKASGVGSIVFISSVAGVVSLGTGSVYAACKAAINQLTKNLACEWAKDNIRSNCVVPWATRTPLVEHLFQNQKFVDDIMSRTPLKRIAEPEEVSSLVAFLCLPAASYITGQVICVDGGLTVHAIVEDLCGFGTTVHTCSRNQAELDKCLSDWQSKGFLVSGSVCDVSSLAHREKLIQEVTSIFNGKLNVYVNNVGANFRKPTVEYTAEDYSGMMAINLDSAFHLCQLAYPLLKASGMGSIVFISSIAGVVSLGTGSVYAASKAAINQLTKSLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKKYVDEMLSRTPIRRIAEAQEISSLVAFLCLPAASYITGQVICIDGGLTVNGFQPSMRIT* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0493 503 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Lja6g0493 503 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Lja6g0493 503 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Lja6g0493 503 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Lja6g0493 503 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Lja6g0493 503 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Lja6g0493 503 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 264 494 IPR036291 -
Lja6g0493 503 Pfam Enoyl-(Acyl carrier protein) reductase 264 492 - -
Lja6g0493 503 Pfam Enoyl-(Acyl carrier protein) reductase 27 261 - -
Lja6g0493 503 Gene3D - 10 263 - -
Lja6g0493 503 Gene3D - 264 495 - -
Lja6g0493 503 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 379 387 IPR002347 -
Lja6g0493 503 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 326 337 IPR002347 -
Lja6g0493 503 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 399 418 IPR002347 -
Lja6g0493 503 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 7 262 - -
Lja6g0493 503 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 386 414 IPR020904 GO:0016491
Lja6g0493 503 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 263 500 - -
Lja6g0493 503 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 262 IPR036291 -
Lja6g0493 503 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Lja6g0493 503 PANTHER TROPINONE REDUCTASE 263 500 IPR045000 GO:0016491
Lja6g0493 503 PANTHER TROPINONE REDUCTASE 7 262 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0493 Lja-Chr6 11918518 11930705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0493 263 498 Miscellaneous Gene Families AT2G29290 60.084 4.36e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0493 K08081 - pvy:116134377 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0493 6 11918518 11930705 Lja6g0493 6 11918518 11930705 ECH