Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0489 ATGGGAGAATTGAAGGTGAAACCATGGGAAGTGTCATCGTCATCGTCATCGTCGTCGCGTTGGATCAGCGAAACGGTGAATGGGTCTCACGAATTGACGATAAAGGGCTATTCTTTGGCCAAAGGAATGGGTCCTGGCAGGTACATCACCAGTGACACGTTCAGCGTTGGTGGCTACGATTGGGCTATCTACTTCTACCCTGATGGGAAGAATCCTGAAGACAATTCTGTGTATGTCTCAGTTTTCATAGCACTGGCTAGCGATGGTGTTGATGTTAGGGCTCTGTTCAAATTGACATTGATGGATCAAACCAACAAGGGTAACCATAAGGTTCATAGCCACTTCGATCGACCCTTGGAGAGTGGCCCTTATAGTTTGAAGTACAGAGGTAGCATGTGGGGTTACAAGCGGTTTTTTCGGAGGTCGCTGTTGGAAAGTTCTGAGTATTTGAAGAATGATTGCCTTGTGATGCACTGCACTGTTGGTGTGGTGAAGACTCGTTTCGAGGGATCTAGACCTGGTGTTGTAGTGCCTACGTCGGCCATGGGTTTGGATTTTAAGGAATTGTTCGAGTCTGAGGTGGGCTGTGACATAGTTTTCAAGGTTAAGAGTGAAAGCTTCAAGGCTCATAAGGTTGTTCTCGCTGCCCGGTCGCCTGTGTTTAGGGCGCAGTTTTTTGGACCCGTTGGGGATCCTAAGCAAGAGGAAGCTGTGGTGGAGGATATAGAGCCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCGGACAAACTTCCTGACATCTATGAGGTTATGGGCTCAGTACCCATGTGTTCATATGCTGTTATGATGCAGCATCTCGTGGCTGCTGCTGATCTCTATAATATTGATAGACTAAAGCTGTTATGTGAATCGAAACTGTGTGACGAGATTACTATTGACAATGTGGCCACATCACTTGCCTTGGCCGAGCAACACCACTGTCCGCAGCTTAAGGCAATCTGTTTGAAATTTATTGCAAATCCATCAAACTTGGGAGCTGTTATGCAGTCCAAAGCTTTTCTAGATTTGAAAGAGAGCTGCCCCTCAATGTTGCTAGAATTGTTGGAGACATTTGCATCAGCGGATGACAACCCAAGCCAGAACCTGAGCAGGAAGAGAAGTAGCAGCAGCATTTACGGGCAAGATTTAGCTGATGCGTTTGCCGCTGAATCAGCTCATCCAAATGGCAGGCGGGTCAGGAGACGGACGTAA 1236 0.4693 MGELKVKPWEVSSSSSSSSRWISETVNGSHELTIKGYSLAKGMGPGRYITSDTFSVGGYDWAIYFYPDGKNPEDNSVYVSVFIALASDGVDVRALFKLTLMDQTNKGNHKVHSHFDRPLESGPYSLKYRGSMWGYKRFFRRSLLESSEYLKNDCLVMHCTVGVVKTRFEGSRPGVVVPTSAMGLDFKELFESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDIEPFIFKAMLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDNVATSLALAEQHHCPQLKAICLKFIANPSNLGAVMQSKAFLDLKESCPSMLLELLETFASADDNPSQNLSRKRSSSSIYGQDLADAFAAESAHPNGRRVRRRT* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0489 411 CDD MATH 28 161 IPR002083 GO:0005515
Lja6g0489 411 CDD BTB_POZ_BPM_plant 182 302 - -
Lja6g0489 411 CDD BACK_AtBPM-like 302 365 IPR034090 -
Lja6g0489 411 SUPERFAMILY POZ domain 179 303 IPR011333 -
Lja6g0489 411 SMART math_3 32 144 IPR002083 GO:0005515
Lja6g0489 411 SUPERFAMILY TRAF domain-like 24 163 - -
Lja6g0489 411 Gene3D Potassium Channel Kv1.1; Chain A 173 299 IPR011333 -
Lja6g0489 411 ProSiteProfiles MATH/TRAF domain profile. 27 161 IPR002083 GO:0005515
Lja6g0489 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 14 376 - -
Lja6g0489 411 ProSiteProfiles BTB domain profile. 196 259 IPR000210 GO:0005515
Lja6g0489 411 SMART BTB_4 196 305 IPR000210 GO:0005515
Lja6g0489 411 Pfam BTB/POZ domain 186 303 IPR000210 GO:0005515
Lja6g0489 411 Gene3D - 304 385 - -
Lja6g0489 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 14 376 IPR045005 GO:0016567
Lja6g0489 411 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 26 166 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0489 Lja-Chr6 11629972 11639834 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0489 K10523 - gmx:100778300 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0489 6 11629972 11639834 Lja6g0489 6 11629972 11639834 ECH