Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0486 ATGAATGGCGATGGGAATAATGAAGCAATGCAAGTGGCCAAAGAGAGGATGGTGTATATGTGGGGTTACTTGCCCGGAGCACTGCCGCAGAGAACGCCGCTGTTGACGCCGGTGATGGTTAGGGCTCCGGCGTCGGGGTATTCCTGGAAAGATGTTTGCGGTGGTGGTTGTGGATTCGCCATGGCTATCTCTGAGCCAGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGTCAAAGCTATGTGACGTCTGGCAAGCACGGGGAAATCCCAGAGCCTTTCCCTCTTCCAACTGAAGCAATTGTAAAAGCTACAGCTGGATGGGCACATTGTGTTTCTGTAACGGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTGTTCCATCTGGAAAAGTATTTGGTGAACCGCCAACAGGTGTAAGTCCTGAAGGGCAGAGTTCATTCTTGACGGAGCAAGTGAGCCCTCATGCTCAAGTCTCAAAATCCACCGGAGGAATTGCATCTAGTACCAGCGGAGAAGAAAATACAAAGAGAAGGAGAGTATCTTCAGCAAAGCAAACAGCTGAAACCTCATCATCGGGTGATGATGTTCTGACAGCTTTGCCCTGCCTTGTCACTCTAAATCCGGGGGTGAGGATAACTAGTGTTGCTGCTGGTGGACGCCATACCCTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGTATGGTGTCCTCACCCCATCTTGTTCCTTGTATTGATTCCTCTTCTTATGGTAAAGATATACCAGCACCATTGGCTCGGGGAAACTTGAGGTCAGAGGGGCACAATGTTAGAGTTCCTGGAAGTTATGTAAAAGCGATTGCCTGTGGAGGTCGACACAGTGCAGTAGTCACAGATGCTGGAGCTGTGCTTGCATTTGGATGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGCCCAACTTGCGTATCATCCTTATTGGGTATCCGAATAGAAGGAGTTGCTGCAGGACTGTGGCATACTGTCTGTACATCTTCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAACTGGGAACTGGTGCTGAACAAGCTGAGACTCTTCCAAGACTACTGGATTGTCCGAGCTTGGAAAATATGAATGTAAAGAGCATATCATGTGGGGCTCGTCACACTGCTCTAATGACAGACAATGGAAAAGTATTCTGCTGGGGATGGAACAAGTACGGACAGCTTGGCCTCGGCGACGTGATTGACCGTAACGTTCCTTCTGAAGTCACCATCGAAGGTTGTGTAGCTAAAAACGTTGCCTGCGGTTGGTGGCATACTCTTCTTCTGGCAGAGTCACCCACTTGA 1416 0.488 MNGDGNNEAMQVAKERMVYMWGYLPGALPQRTPLLTPVMVRAPASGYSWKDVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAIVKATAGWAHCVSVTDCGEVYTWGWKECVPSGKVFGEPPTGVSPEGQSSFLTEQVSPHAQVSKSTGGIASSTSGEENTKRRRVSSAKQTAETSSSGDDVLTALPCLVTLNPGVRITSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSSYGKDIPAPLARGNLRSEGHNVRVPGSYVKAIACGGRHSAVVTDAGAVLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSSDGDVYAFGGNQFGQLGTGAEQAETLPRLLDCPSLENMNVKSISCGARHTALMTDNGKVFCWGWNKYGQLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0486 471 Pfam Regulator of chromosome condensation (RCC1) repeat 313 360 IPR000408 -
Lja6g0486 471 Pfam Regulator of chromosome condensation (RCC1) repeat 364 414 IPR000408 -
Lja6g0486 471 Pfam Regulator of chromosome condensation (RCC1) repeat 418 466 IPR000408 -
Lja6g0486 471 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 405 415 IPR000408 -
Lja6g0486 471 Pfam Regulator of chromosome condensation (RCC1) repeat 216 245 - -
Lja6g0486 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 418 IPR000408 -
Lja6g0486 471 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 219 229 IPR000408 -
Lja6g0486 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Lja6g0486 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 419 469 IPR000408 -
Lja6g0486 471 SUPERFAMILY RCC1/BLIP-II 10 129 IPR009091 -
Lja6g0486 471 Gene3D - 5 165 IPR009091 -
Lja6g0486 471 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 471 - -
Lja6g0486 471 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 12 471 - -
Lja6g0486 471 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 299 309 IPR000408 -
Lja6g0486 471 MobiDBLite consensus disorder prediction 140 197 - -
Lja6g0486 471 SUPERFAMILY RCC1/BLIP-II 202 468 IPR009091 -
Lja6g0486 471 Gene3D - 185 270 IPR009091 -
Lja6g0486 471 Gene3D - 271 471 IPR009091 -
Lja6g0486 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 233 312 IPR000408 -
Lja6g0486 471 MobiDBLite consensus disorder prediction 143 175 - -
Lja6g0486 471 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Lja6g0486 471 PRINTS Chromosome condensation regulator RCC1 signature 414 435 IPR000408 -
Lja6g0486 471 PRINTS Chromosome condensation regulator RCC1 signature 219 235 IPR000408 -
Lja6g0486 471 PRINTS Chromosome condensation regulator RCC1 signature 354 372 IPR000408 -
Lja6g0486 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 67 118 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0486 Lja-Chr6 11590883 11597862 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0486 - - gmx:100778841 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0486 6 11590883 11597862 Lja6g0486 6 11590883 11597862 ECH
Lja6g0486 6 11590883 11597862 Lja6g0486 6 11590883 11597862 PCT