Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0473 ATGGCATACAAAGTGGACCATGAATACGATTATCTCTTCAAGATTGTACTCATTGGAGACTCTGGTGTTGGGAAATCCAATATACTCTCCAGGTTTACCCGAAATGAGTTTTGTTTGGAGTCCAAGTCTACCATTGGGGTCGAATTTGCAACTAGAACATTACAGGTGGAGGGGAAGACTGTAAAGGCACAAATATGGGACACTGCTGGTCAAGAGAGGTACAGAGCTATTACTAGTGCATACTACAGAGGAGCTGTTGGTGCCTTGTTGGTGTACGACATAACAAAAAGGCAAACATTTGAAAATGTGCAGAGGTGGCTTCGCGAGCTAAGGGACCATGCCGACGCCAACATTGTTATTATGATGGCCGGAAATAAGTCGGACCTGAATCACCTGAGAGCAGTCTCATCAGAAGATGCTCAAAACTTGGCTGAGAAGGAGAGTCTGTCATTTCTAGAGACTTCAGCATTGGAGGCGTTGAATGTTGAAAAGGCATTCCAAACCATTTTGTTTGATATATACCAAATCATAAGTAGAAAGGCATTGGCAGCACAGGAGGCAGCTTCTACTACTAGCCTCCCTCATGGGACTACCATAAATGTGTCAAATTTGTCAAGTAATGTGGAGAAGAAAACATGTTGCTCCAATTGA 651 0.4332 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADANIVIMMAGNKSDLNHLRAVSSEDAQNLAEKESLSFLETSALEALNVEKAFQTILFDIYQIISRKALAAQEAASTTSLPHGTTINVSNLSSNVEKKTCCSN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0473 216 PANTHER - 1 216 - -
Lja6g0473 216 Gene3D - 5 214 IPR027417 -
Lja6g0473 216 SMART ras_sub_4 10 176 - -
Lja6g0473 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Lja6g0473 216 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 216 - -
Lja6g0473 216 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Lja6g0473 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Lja6g0473 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Lja6g0473 216 ProSiteProfiles small GTPase Ras family profile. 1 216 IPR001806 GO:0003924|GO:0005525
Lja6g0473 216 CDD Rab11_like 10 174 - -
Lja6g0473 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Lja6g0473 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Lja6g0473 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Lja6g0473 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Lja6g0473 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Lja6g0473 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Lja6g0473 216 SMART rab_sub_5 13 176 - -
Lja6g0473 216 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Lja6g0473 216 SMART ran_sub_2 18 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0473 Lja-Chr6 11384325 11386176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0473 14 166 EF-hand Containing Proteins AT5G27540 27.879 4.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0473 K07904 - gmx:100799521 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0473 6 11384325 11386176 Lja6g0473 6 11384325 11386176 ECH
Lja3g0677 3 6768822 6770973 Lja6g0473 6 11384325 11386176 ECH
Lja6g0473 6 11384325 11386176 Lja6g0473 6 11384325 11386176 PCT